RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 VASH1Q7L8A9 365 aaPredicted RBP9.2□□□□□ -0.94
VPS39-208ENST00000564994 RSRC1Q96IZ7 334 aaKnown RBP9.2□□□□□ -0.94
VPS39-208ENST00000564994 C4orf45Q96LM5 186 aa9.2□□□□□ -0.94
VPS39-208ENST00000564994 SYT4Q9H2B2 425 aa9.2□□□□□ -0.94
VPS39-208ENST00000564994 GORASP2Q9H8Y8 452 aa9.2□□□□□ -0.94
VPS39-208ENST00000564994 VSX1Q9NZR4 365 aaPredicted RBP9.2□□□□□ -0.94
VPS39-208ENST00000564994 KLHL21Q9UJP4 597 aa9.2□□□□□ -0.94
VPS39-208ENST00000564994 FAM32AQ9Y421 112 aaKnown RBP9.2□□□□□ -0.94
VPS39-208ENST00000564994 IER3IP1Q9Y5U9 82 aa9.2□□□□□ -0.94
VPS39-208ENST00000564994 SOCS2O14508 198 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 XKRYO14609 159 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 TPD52L2O43399 206 aaKnown RBP9.19□□□□□ -0.94
VPS39-208ENST00000564994 DOK2O60496 412 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 SLC16A7O60669 478 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 UBOX5O94941 541 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 ABHD16AO95870 558 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 TXNDC12O95881 172 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 MT-ND5P03915 603 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 MSMBP08118 114 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 COX5BP10606 129 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 HSD17B1P14061 328 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 RBMXP38159 391 aaKnown RBP9.19□□□□□ -0.94
VPS39-208ENST00000564994 CDKN2AP42771 156 aaKnown RBP9.19□□□□□ -0.94
VPS39-208ENST00000564994 HTR5AP47898 357 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 DBPQ10586 325 aaPredicted RBP9.19□□□□□ -0.94
VPS39-208ENST00000564994 PSG7Q13046 419 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 FAM209AQ5JX71 171 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 GPR139Q6DWJ6 353 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 UNQ6126/PRO20091Q6UXV3 157 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 CPLX4Q7Z7G2 160 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 ZER1Q7Z7L7 766 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 GLCCI1Q86VQ1 547 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 SLC7A6Q92536 515 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 TMEM186Q96B77 213 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 PYURFQ96I23 114 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 WACQ9BTA9 647 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 REPIN1Q9BWE0 567 aaKnown RBP9.19□□□□□ -0.94
VPS39-208ENST00000564994 NUAK2Q9H093 628 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 RERGLQ9H628 205 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 SAP30LQ9HAJ7 183 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 MSL2Q9HCI7 577 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 DECR2Q9NUI1 292 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 ARL8BQ9NVJ2 186 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 HIF1ANQ9NWT6 349 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 ASH2LQ9UBL3 628 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 CD300AQ9UGN4 299 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 NDRG4Q9ULP0 352 aaKnown RBP9.19□□□□□ -0.94
VPS39-208ENST00000564994 COA3Q9Y2R0 106 aaPredicted RBP9.19□□□□□ -0.94
VPS39-208ENST00000564994 WIPI2Q9Y4P8 454 aa9.19□□□□□ -0.94
VPS39-208ENST00000564994 TENM1Q9UKZ4 2725 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 PLSCR5A0PG75 271 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 UNC119BA6NIH7 251 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 CLDN25C9JDP6 229 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 H3BSA7 217 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 DCTN6O00399 190 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 SGCEO43556 437 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 DEAF1O75398 565 aaPredicted RBP9.18□□□□□ -0.94
VPS39-208ENST00000564994 KHDRBS3O75525 346 aaKnown RBP9.18□□□□□ -0.94
VPS39-208ENST00000564994 PPP1R3DO95685 299 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 GPANK1O95872 356 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 ADH4P08319 380 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 SRP14P37108 136 aaKnown RBP9.18□□□□□ -0.94
VPS39-208ENST00000564994 ARHGDIAP52565 204 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 TEKQ02763 1124 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 SCRN3Q0VDG4 424 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 AQP6Q13520 282 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 HFEQ30201 348 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 CCDC92Q53HC0 331 aaPredicted RBP9.18□□□□□ -0.94
VPS39-208ENST00000564994 DPY19L2P2Q6ZN68 376 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 PIGWQ7Z7B1 504 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 GLB1L2Q8IW92 636 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 C1orf174Q8IYL3 243 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 PGAM4Q8N0Y7 254 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 CCL17Q92583 94 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 ELMOD3Q96FG2 381 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 TSSK2Q96PF2 358 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 LRRC37BQ96QE4 947 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 CDRT15Q96T59 188 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 C19orf24Q9BVV8 132 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 NDEL1Q9GZM8 345 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 NSRP1Q9H0G5 558 aaKnown RBP9.18□□□□□ -0.94
VPS39-208ENST00000564994 ZNF665Q9H7R5 613 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 ELOVL3Q9HB03 270 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 TBCCD1Q9NVR7 557 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 DCAF16Q9NXF7 216 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 MAGEL2Q9UJ55 1249 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 AURKCQ9UQB9 309 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 STARD10Q9Y365 291 aa9.18□□□□□ -0.94
VPS39-208ENST00000564994 OR6C6A6NF89 314 aa9.17□□□□□ -0.94
VPS39-208ENST00000564994 ARPC2O15144 300 aa9.17□□□□□ -0.94
VPS39-208ENST00000564994 RER1O15258 196 aa9.17□□□□□ -0.94
VPS39-208ENST00000564994 TIMM8AO60220 97 aaPredicted RBP9.17□□□□□ -0.94
VPS39-208ENST00000564994 GMNNO75496 209 aa9.17□□□□□ -0.94
VPS39-208ENST00000564994 GADD45GO95257 159 aa9.17□□□□□ -0.94
VPS39-208ENST00000564994 AVPP01185 164 aa9.17□□□□□ -0.94
VPS39-208ENST00000564994 CD55P08174 381 aa9.17□□□□□ -0.94
VPS39-208ENST00000564994 DBHP09172 617 aa9.17□□□□□ -0.94
VPS39-208ENST00000564994 LIPAP38571 399 aa9.17□□□□□ -0.94
VPS39-208ENST00000564994 ERFP50548 548 aa9.17□□□□□ -0.94
VPS39-208ENST00000564994 RPS6KA3P51812 740 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms