RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 J3QRK9 145 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 RHODO00212 210 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 SDHDO14521 159 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 LATO43561 262 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 XPNPEP2O43895 674 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 FCGR3BO75015 233 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 NFATC1O95644 943 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 C6orf47O95873 294 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 EGFP01133 1207 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 ARG1P05089 322 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 ALDOCP09972 364 aaKnown RBP4.5□□□□□ -1.69
VPS35-205ENST00000563984 SLC35G4P0C7Q5 338 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 B4GALT1P15291 398 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 OMGP23515 440 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 GDF1P27539 372 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 PSMB4P28070 264 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 SRD5A2P31213 254 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 NPBWR1P48145 328 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 ACLYP53396 1101 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 TMBIM6P55061 237 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 TAS2R50P59544 299 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 SNRPEP62304 92 aaKnown RBP4.5□□□□□ -1.69
VPS35-205ENST00000563984 PPIAP62937 165 aaKnown RBP4.5□□□□□ -1.69
VPS35-205ENST00000563984 ACVR1Q04771 509 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 FUT7Q11130 342 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 SKP2Q13309 424 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 CRMP1Q14194 572 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 NSDHLQ15738 373 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 ISXQ2M1V0 245 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 CEACAM21Q3KPI0 293 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 CXorf66Q5JRM2 361 aaPredicted RBP4.5□□□□□ -1.69
VPS35-205ENST00000563984 FAM69BQ5VUD6 431 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 NSUN5P2Q63ZY6 315 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 STEAP1BQ6NZ63 245 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 ZNF549Q6P9A3 640 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 TEX261Q6UWH6 196 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 LCLAT1Q6UWP7 414 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 ZNF621Q6ZSS3 439 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 IL17RELQ6ZVW7 336 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 SSX6Q7RTT6 188 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 HSD17B13Q7Z5P4 300 aaPredicted RBP4.5□□□□□ -1.69
VPS35-205ENST00000563984 CPNE9Q8IYJ1 553 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 TMEM123Q8N131 208 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 PTGR2Q8N8N7 351 aaPredicted RBP4.5□□□□□ -1.69
VPS35-205ENST00000563984 AMER3Q8N944 861 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 SIDT2Q8NBJ9 832 aaKnown RBP4.5□□□□□ -1.69
VPS35-205ENST00000563984 KIAA0895Q8NCT3 520 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 ENGASEQ8NFI3 743 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 SLC26A10Q8NG04 563 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 OR4E2Q8NGC2 313 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 OR13C4Q8NGS5 318 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 OR4Q3Q8NH05 313 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 OR5K1Q8NHB7 308 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 ORAOV1Q8WV07 137 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 DCAKDQ8WVC6 231 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 SPRYD4Q8WW59 207 aaPredicted RBP4.5□□□□□ -1.69
VPS35-205ENST00000563984 TFGQ92734 400 aaPredicted RBP4.5□□□□□ -1.69
VPS35-205ENST00000563984 TOMM40LQ969M1 308 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 MCHR2Q969V1 340 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 PINX1Q96BK5 328 aaKnown RBP4.5□□□□□ -1.69
VPS35-205ENST00000563984 C8orf44Q96CB5 159 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 FBXL8Q96CD0 374 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 ST6GAL2Q96JF0 529 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 JSRP1Q96MG2 331 aaPredicted RBP4.5□□□□□ -1.69
VPS35-205ENST00000563984 AMDHD1Q96NU7 426 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 SLC6A7Q99884 636 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 MCRIP2Q9BUT9 160 aaKnown RBP4.5□□□□□ -1.69
VPS35-205ENST00000563984 MECRQ9BV79 373 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 CADM1Q9BY67 442 aaKnown RBP4.5□□□□□ -1.69
VPS35-205ENST00000563984 DUSP16Q9BY84 665 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 SYT4Q9H2B2 425 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 TXNIPQ9H3M7 391 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 PTGES2Q9H7Z7 377 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 TMEM27Q9HBJ8 222 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 TXNRD2Q9NNW7 524 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 SLCO1B3Q9NPD5 702 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 NLE1Q9NVX2 485 aaPredicted RBP4.5□□□□□ -1.69
VPS35-205ENST00000563984 ARL15Q9NXU5 204 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 PIPOXQ9P0Z9 390 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 CLN8Q9UBY8 286 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 HSPB7Q9UBY9 170 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 CD207Q9UJ71 328 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 ZNF580Q9UK33 172 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 FBXO5Q9UKT4 447 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 B9D1Q9UPM9 204 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 NEU3Q9UQ49 428 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 AMDHD2Q9Y303 409 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 RAP2CQ9Y3L5 183 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 LRP12Q9Y561 859 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 CROCC2H7BZ55 1655 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 CNTNAP1P78357 1384 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 MAP3K4Q9Y6R4 1608 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 ADGRL2O95490 1459 aa4.49□□□□□ -1.69
VPS35-205ENST00000563984 ADAMTS12P58397 1594 aa4.49□□□□□ -1.69
VPS35-205ENST00000563984 LOC105371242A0A075B767 164 aa4.49□□□□□ -1.69
VPS35-205ENST00000563984 A0A087WXM4 84 aa4.49□□□□□ -1.69
VPS35-205ENST00000563984 IGSF23A1L1A6 192 aa4.49□□□□□ -1.69
VPS35-205ENST00000563984 CPED1A4D0V7 1026 aa4.49□□□□□ -1.69
VPS35-205ENST00000563984 PRORSD1PA6NEY8 169 aa4.49□□□□□ -1.69
VPS35-205ENST00000563984 ARL5CA6NH57 179 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms