RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 ROM1Q03395 351 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 MXD1Q05195 221 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 ALKBH1Q13686 389 aaKnown RBP7.92□□□□□ -1.14
VPS39-207ENST00000563692 SLC17A1Q14916 467 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 HIST3H3Q16695 136 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 MEP1BQ16820 701 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 PCK2Q16822 640 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 CARD17Q5XLA6 110 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 MZT2AQ6P582 158 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 SLC25A47Q6Q0C1 308 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 RPTNQ6XPR3 784 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 TMEM91Q6ZNR0 172 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 TRILQ7L0X0 811 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.92□□□□□ -1.14
VPS39-207ENST00000563692 ZSCAN2Q7Z7L9 614 aaPredicted RBP7.92□□□□□ -1.14
VPS39-207ENST00000563692 GGNQ86UU5 652 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 UBQLNLQ8IYU4 475 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 FAM109AQ8N4B1 249 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 RFLNBQ8N5W9 214 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 TMEM251Q8N6I4 163 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 ZFP62Q8NB50 900 aaPredicted RBP7.92□□□□□ -1.14
VPS39-207ENST00000563692 SLC26A10Q8NG04 563 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 OR52N5Q8NH56 324 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 OR10D3Q8NH80 312 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 OR5AK2Q8NH90 309 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 ABTB1Q969K4 478 aaPredicted RBP7.92□□□□□ -1.14
VPS39-207ENST00000563692 MCHR2Q969V1 340 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 TRMT61AQ96FX7 289 aaKnown RBP7.92□□□□□ -1.14
VPS39-207ENST00000563692 GPR137Q96N19 417 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 KCNS3Q9BQ31 491 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 HES7Q9BYE0 225 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 TTTY10Q9BZA0 68 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 LDAHQ9H6V9 325 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 EXO5Q9H790 373 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 ZNF703Q9H7S9 590 aaPredicted RBP7.92□□□□□ -1.14
VPS39-207ENST00000563692 ELOVL3Q9HB03 270 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 B3GAT2Q9NPZ5 323 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 MRPL22Q9NWU5 206 aaKnown RBP7.92□□□□□ -1.14
VPS39-207ENST00000563692 SLCO1C1Q9NYB5 712 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 GLTPQ9NZD2 209 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 SH3BGRL2Q9UJC5 107 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 GRIP1Q9Y3R0 1128 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 PMF1-BGLAPU3KQ54 211 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 DIDO1Q9BTC0 2240 aaKnown RBP7.92□□□□□ -1.14
VPS39-207ENST00000563692 NOTCH2Q04721 2471 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 DOPEY1Q5JWR5 2465 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 MAST4O15021 2626 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 IGHV3-15A0A0B4J1V0 119 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 IQCMA0A1B0GVH7 501 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 A0A1W2PPL8 197 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 TMEM212A6NML5 194 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 CYSRT1A8MQ03 144 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 PSMD9O00233 223 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 GPR171O14626 319 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 PDCD5O14737 125 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 SMAD9O15198 467 aaKnown RBP7.91□□□□□ -1.14
VPS39-207ENST00000563692 RGS5O15539 181 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 SLC43A1O75387 559 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 UPK3AO75631 287 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 CLDN1O95832 211 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 GPANK1O95872 356 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 H2BFMP0C1H6 154 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 CALRP27797 417 aaKnown RBP7.91□□□□□ -1.14
VPS39-207ENST00000563692 CA7P43166 264 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 MAGEA5P43359 124 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 CCR9P51686 369 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 SUCLG1P53597 346 aaKnown RBP7.91□□□□□ -1.14
VPS39-207ENST00000563692 FMODQ06828 376 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 KCNMB1Q16558 191 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 ZMAT1Q5H9K5 638 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 SPANXN2Q5MJ10 180 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 HIST2H2BCQ6DN03 193 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 FDX2Q6P4F2 183 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 KLHL24Q6TFL4 600 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 UNQ9370/PRO34162Q6UXP9 181 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 RHOUQ7L0Q8 258 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 ZNF676Q8N7Q3 588 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 RNF128Q8TEB7 428 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 ACOT12Q8WYK0 555 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 C11orf40Q8WZ69 217 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 TMEM54Q969K7 222 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 ADGRG7Q96K78 797 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 PGLYRP3Q96LB9 341 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 FOXN4Q96NZ1 517 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 OR2M2Q96R28 347 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 ABHD6Q9BV23 337 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 SRXN1Q9BYN0 137 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 PRRG4Q9BZD6 226 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 SLITRK2Q9H156 845 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 C1orf198Q9H425 327 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 PARPBPQ9NWS1 579 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 MCTS1Q9ULC4 181 aaKnown RBP7.91□□□□□ -1.14
VPS39-207ENST00000563692 RCE1Q9Y256 329 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 KLHDC2Q9Y2U9 406 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 PCNX3Q9H6A9 2034 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 ZGRF1Q86YA3 2104 aa7.91□□□□□ -1.14
VPS39-207ENST00000563692 TRAV1-2A0A0B4J238 106 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 PRSS44E7EML9 344 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 LOC110117498-PIK3R3F6TDL0 507 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 PRRG2O14669 202 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms