RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 ALKBH3Q96Q83 286 aaPredicted RBP9.08□□□□□ -0.96
USP3-219ENST00000561326 FOXB1Q99853 325 aa9.08□□□□□ -0.96
USP3-219ENST00000561326 SLX1AQ9BQ83 275 aa9.08□□□□□ -0.96
USP3-219ENST00000561326 TP63Q9H3D4 680 aaPredicted RBP9.08□□□□□ -0.96
USP3-219ENST00000561326 C12orf49Q9H741 205 aa9.08□□□□□ -0.96
USP3-219ENST00000561326 EXOSC4Q9NPD3 245 aaKnown RBP9.08□□□□□ -0.96
USP3-219ENST00000561326 MRM2Q9UI43 246 aaKnown RBP9.08□□□□□ -0.96
USP3-219ENST00000561326 GDF2Q9UK05 429 aaPredicted RBP9.08□□□□□ -0.96
USP3-219ENST00000561326 ZMIZ1Q9ULJ6 1067 aa9.08□□□□□ -0.96
USP3-219ENST00000561326 KLHDC2Q9Y2U9 406 aa9.08□□□□□ -0.96
USP3-219ENST00000561326 LHFPL6Q9Y693 200 aa9.08□□□□□ -0.96
USP3-219ENST00000561326 MYO7BQ6PIF6 2116 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 LOC100506127A0A0U1RQW1 187 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 MBD3L4A6NDZ8 208 aaPredicted RBP9.07□□□□□ -0.96
USP3-219ENST00000561326 MBD3L3A6NE82 208 aaPredicted RBP9.07□□□□□ -0.96
USP3-219ENST00000561326 MBD3L5A6NJ08 208 aaPredicted RBP9.07□□□□□ -0.96
USP3-219ENST00000561326 ZNF878C9JN71 531 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 H3BMQ9 156 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 ERVH48-1M5A8F1 160 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 PSMD9O00233 223 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 RPP14O95059 124 aaKnown RBP9.07□□□□□ -0.96
USP3-219ENST00000561326 GABARAPO95166 117 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 LALBAP00709 142 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 IGHV3-9P01782 118 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 APOC1P02654 83 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 EDN3P14138 238 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 HSD11B1P28845 292 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 MPGP29372 298 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 DCTDP32321 178 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 TDGF1P3P51864 188 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 CASP6P55212 293 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 GRB2P62993 217 aaKnown RBP9.07□□□□□ -0.96
USP3-219ENST00000561326 ARF1P84077 181 aaKnown RBP9.07□□□□□ -0.96
USP3-219ENST00000561326 SLC3A1Q07837 685 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 SCRN3Q0VDG4 424 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 ECH1Q13011 328 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 ALKBH1Q13686 389 aaKnown RBP9.07□□□□□ -0.96
USP3-219ENST00000561326 CTF1Q16619 201 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 CNPY1Q3B7I2 92 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 ZNF829Q3KNS6 432 aaPredicted RBP9.07□□□□□ -0.96
USP3-219ENST00000561326 DMKNQ6E0U4 476 aaPredicted RBP9.07□□□□□ -0.96
USP3-219ENST00000561326 FDX2Q6P4F2 183 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 CORO6Q6QEF8 472 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 PAMR1Q6UXH9 720 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 LRRN1Q6UXK5 716 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 ZNF813Q6ZN06 617 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 SLC16A12Q6ZSM3 486 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 SLC16A14Q7RTX9 510 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 DPPA2Q7Z7J5 298 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 CD163Q86VB7 1156 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 GCNT2Q8N0V5 402 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 ZFP41Q8N8Y5 198 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 CNEP1R1Q8N9A8 125 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 C9orf106Q8NAJ2 232 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 KBTBD8Q8NFY9 601 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 OR6K3Q8NGY3 331 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 MBD3L2Q8NHZ7 208 aaPredicted RBP9.07□□□□□ -0.96
USP3-219ENST00000561326 ST7LQ8TDW4 575 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 RNF133Q8WVZ7 376 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 NABP1Q96AH0 204 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 SMIM19Q96E16 107 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 ZNF837Q96EG3 531 aaPredicted RBP9.07□□□□□ -0.96
USP3-219ENST00000561326 CHCHD6Q9BRQ6 235 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 ZNF416Q9BWM5 594 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 NAA50Q9GZZ1 169 aaKnown RBP9.07□□□□□ -0.96
USP3-219ENST00000561326 COMMD4Q9H0A8 199 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 OR51E2Q9H255 320 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 ACOXLQ9NUZ1 547 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 ASF1BQ9NVP2 202 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 ASH2LQ9UBL3 628 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 TIMM10BQ9Y5J6 103 aa9.07□□□□□ -0.96
USP3-219ENST00000561326 SPTA1P02549 2419 aa9.06□□□□□ -0.96
USP3-219ENST00000561326 ARPC4-TTLL3A0A0A6YYG9 625 aa9.06□□□□□ -0.96
USP3-219ENST00000561326 TMEM269A0A1B0GVZ9 245 aa9.06□□□□□ -0.96
USP3-219ENST00000561326 TRDV1A0A1B0GX56 115 aa9.06□□□□□ -0.96
USP3-219ENST00000561326 TMEM212A6NML5 194 aa9.06□□□□□ -0.96
USP3-219ENST00000561326 E9PI62 339 aa9.06□□□□□ -0.96
USP3-219ENST00000561326 ZNHIT1O43257 154 aa9.06□□□□□ -0.96
USP3-219ENST00000561326 TMIGD3P0DMS9 266 aaPredicted RBP9.06□□□□□ -0.96
USP3-219ENST00000561326 B4GALT1P15291 398 aa9.06□□□□□ -0.96
USP3-219ENST00000561326 NR4A1P22736 598 aa9.06□□□□□ -0.96
USP3-219ENST00000561326 FGF9P31371 208 aaPredicted RBP9.06□□□□□ -0.96
USP3-219ENST00000561326 PSMB10P40306 273 aa9.06□□□□□ -0.96
USP3-219ENST00000561326 CRYBB2P43320 205 aa9.06□□□□□ -0.96
USP3-219ENST00000561326 GDI2P50395 445 aaKnown RBP9.06□□□□□ -0.96
USP3-219ENST00000561326 CCR9P51686 369 aa9.06□□□□□ -0.96
USP3-219ENST00000561326 LSM3P62310 102 aaKnown RBP9.06□□□□□ -0.96
USP3-219ENST00000561326 TUBA1BP68363 451 aa9.06□□□□□ -0.96
USP3-219ENST00000561326 ENDOGQ14249 297 aaKnown RBP9.06□□□□□ -0.96
USP3-219ENST00000561326 CDK5R1Q15078 307 aa9.06□□□□□ -0.96
USP3-219ENST00000561326 SLC36A2Q495M3 483 aa9.06□□□□□ -0.96
USP3-219ENST00000561326 OTPQ5XKR4 325 aa9.06□□□□□ -0.96
USP3-219ENST00000561326 ANKRD16Q6P6B7 361 aa9.06□□□□□ -0.96
USP3-219ENST00000561326 USP43Q70EL4 1123 aa9.06□□□□□ -0.96
USP3-219ENST00000561326 TUBA1AQ71U36 451 aa9.06□□□□□ -0.96
USP3-219ENST00000561326 SPATC1Q76KD6 591 aa9.06□□□□□ -0.96
USP3-219ENST00000561326 ZNF627Q7L945 461 aa9.06□□□□□ -0.96
USP3-219ENST00000561326 LINGO2Q7L985 606 aa9.06□□□□□ -0.96
USP3-219ENST00000561326 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.06□□□□□ -0.96
USP3-219ENST00000561326 OR5AK2Q8NH90 309 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms