RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 NPEPL1Q8NDH3 523 aa8.09□□□□□ -1.11
LDLR-211ENST00000560173 SETD9Q8NE22 299 aa8.09□□□□□ -1.11
LDLR-211ENST00000560173 SLC30A7Q8NEW0 376 aa8.09□□□□□ -1.11
LDLR-211ENST00000560173 SDR9C7Q8NEX9 313 aa8.09□□□□□ -1.11
LDLR-211ENST00000560173 OR52E2Q8NGJ4 325 aa8.09□□□□□ -1.11
LDLR-211ENST00000560173 OR4Q3Q8NH05 313 aa8.09□□□□□ -1.11
LDLR-211ENST00000560173 CNBD2Q96M20 576 aa8.09□□□□□ -1.11
LDLR-211ENST00000560173 FOXN4Q96NZ1 517 aa8.09□□□□□ -1.11
LDLR-211ENST00000560173 TSSK2Q96PF2 358 aa8.09□□□□□ -1.11
LDLR-211ENST00000560173 DDOQ99489 341 aa8.09□□□□□ -1.11
LDLR-211ENST00000560173 TSSK6Q9BXA6 273 aa8.09□□□□□ -1.11
LDLR-211ENST00000560173 RACGAP1Q9H0H5 632 aa8.09□□□□□ -1.11
LDLR-211ENST00000560173 WNT5BQ9H1J7 359 aa8.09□□□□□ -1.11
LDLR-211ENST00000560173 KCNN2Q9H2S1 579 aa8.09□□□□□ -1.11
LDLR-211ENST00000560173 RERGLQ9H628 205 aa8.09□□□□□ -1.11
LDLR-211ENST00000560173 ZNF442Q9H7R0 627 aa8.09□□□□□ -1.11
LDLR-211ENST00000560173 ZNF696Q9H7X3 374 aa8.09□□□□□ -1.11
LDLR-211ENST00000560173 CCNB1IP1Q9NPC3 277 aa8.09□□□□□ -1.11
LDLR-211ENST00000560173 CBLN4Q9NTU7 201 aa8.09□□□□□ -1.11
LDLR-211ENST00000560173 KIF17Q9P2E2 1029 aa8.09□□□□□ -1.11
LDLR-211ENST00000560173 REV1Q9UBZ9 1251 aa8.09□□□□□ -1.11
LDLR-211ENST00000560173 BAIAP2Q9UQB8 552 aa8.09□□□□□ -1.11
LDLR-211ENST00000560173 COA3Q9Y2R0 106 aaPredicted RBP8.09□□□□□ -1.11
LDLR-211ENST00000560173 HSPE1-MOB4S4R3N1 261 aa8.09□□□□□ -1.11
LDLR-211ENST00000560173 ARFGEF3Q5TH69 2177 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 IQCMA0A1B0GVH7 501 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 C12orf71A8MTZ7 269 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 GPRIN2O60269 458 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 SNAP29O95721 258 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 OR4A8P0C604 315 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 PRKACGP22612 351 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 APEX1P27695 318 aaKnown RBP8.08□□□□□ -1.12
LDLR-211ENST00000560173 THBS4P35443 961 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 SERPINF1P36955 418 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 ATP5J2P56134 94 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 PCBD1P61457 104 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 LSM6P62312 80 aaKnown RBP8.08□□□□□ -1.12
LDLR-211ENST00000560173 ADAM8P78325 824 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 PSG4Q00888 419 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 PLP2Q04941 152 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 DBPQ10586 325 aaPredicted RBP8.08□□□□□ -1.12
LDLR-211ENST00000560173 EFNB3Q15768 340 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 KCNMB1Q16558 191 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 SWI5Q1ZZU3 235 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 MST1LQ2TV78 715 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 ZNF362Q5T0B9 420 aaPredicted RBP8.08□□□□□ -1.12
LDLR-211ENST00000560173 SHEQ5VZ18 495 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 OTPQ5XKR4 325 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 FAHD1Q6P587 224 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 VHLLQ6RSH7 139 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 SYT9Q86SS6 491 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 ZBTB46Q86UZ6 589 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 SLC37A3Q8NCC5 494 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 CPEB3Q8NE35 698 aaKnown RBP8.08□□□□□ -1.12
LDLR-211ENST00000560173 WFDC11Q8NEX6 87 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 OR2T33Q8NG76 320 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 AKR7LQ8NHP1 331 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 CYGBQ8WWM9 190 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 C11orf40Q8WZ69 217 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 WACQ9BTA9 647 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 CACNG6Q9BXT2 260 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 MRPS26Q9BYN8 205 aaKnown RBP8.08□□□□□ -1.12
LDLR-211ENST00000560173 OR2H1Q9GZK4 316 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 FAM192AQ9GZU8 254 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 FN3KQ9H479 309 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 ZNF556Q9HAH1 456 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 RPRD1BQ9NQG5 326 aaKnown RBP8.08□□□□□ -1.12
LDLR-211ENST00000560173 BLOC1S6Q9UL45 172 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 B9D1Q9UPM9 204 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 MYRFQ9Y2G1 1151 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 TIMM10BQ9Y5J6 103 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 FKBP7Q9Y680 259 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 ZANQ9Y493 2812 aa8.08□□□□□ -1.12
LDLR-211ENST00000560173 LOC100509620A0A075B734 347 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 H3BN98 237 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 H7C417 338 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 MPZL1O95297 269 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 GPANK1O95872 356 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 PTHP01270 115 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 IGHV4-39P01824 125 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 CCL2P13500 99 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 OSMP13725 252 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 IGFBP5P24593 272 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 STOMP27105 288 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 APLNRP35414 380 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 GLRXP35754 106 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 RPS23P62266 143 aaKnown RBP8.07□□□□□ -1.12
LDLR-211ENST00000560173 ADARB1P78563 741 aaKnown RBP8.07□□□□□ -1.12
LDLR-211ENST00000560173 GALK2Q01415 458 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 SCRN3Q0VDG4 424 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 AQP6Q13520 282 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 CRMP1Q14194 572 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 MSMPQ1L6U9 139 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 TBC1D28Q2M2D7 210 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 KCTD21Q4G0X4 260 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 ZNF774Q6NX45 483 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 PRSS57Q6UWY2 283 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 TGIF2LYQ8IUE0 185 aa8.07□□□□□ -1.12
LDLR-211ENST00000560173 C8orf59Q8N0T1 100 aaPredicted RBP8.07□□□□□ -1.12
LDLR-211ENST00000560173 IQCF1Q8N6M8 205 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 96.6 ms