RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	ZNF709	Q8N972	641 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR1S2	Q8NGQ3	325 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR51E1	Q8TCB6	317 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	ADAMTS18	Q8TE60	1221 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	TTC9	Q92623	222 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	FRZB	Q92765	325 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	SPACA5	Q96QH8	159 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	BCL2L10	Q9HD36	194 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	PIGL	Q9Y2B2	252 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	TUSC2	O75896	110 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	HNRNPA1	P09651	372 aa	Known RBP eCLIP	4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZNF728	P0DKX0	622 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	VSIG10L2	P0DP72	767 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	NAT2	P11245	290 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	FCGR2C	P31995	323 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	EEF1A1	P68104	462 aa	Known RBP	4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	KDM8	Q8N371	416 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR1M1	Q8NGA1	313 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	BAD	Q92934	168 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	SDSL	Q96GA7	329 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	TSPAN32	Q96QS1	320 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZBP1	Q9H171	429 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	CHRD	Q9H2X0	955 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	C19orf12	Q9NSK7	152 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	PLXNA1	Q9UIW2	1896 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	C9orf170	A2RU37	121 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	MEGF11	A6BM72	1044 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	MCRIP1	C9JLW8	97 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	BHLHE40	O14503	412 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	SIGLEC6	O43699	453 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	SSSCA1	O60232	199 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	DIRAS3	O95661	229 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	IGHA1	P01876	353 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	THBS1	P07996	1170 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZNF93	P35789	620 aa	Predicted RBP	4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR1D4	P47884	311 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	EGR3	Q06889	387 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	RPL18	Q07020	188 aa	Known RBP	4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	ACSM1	Q08AH1	577 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	LAMTOR1	Q6IAA8	161 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZNF611	Q8N823	705 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	FAM181A	Q8N9Y4	354 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	DIO2	Q92813	273 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	RSPRY1	Q96DX4	576 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZDHHC12	Q96GR4	267 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZNF2	Q9BSG1	426 aa	Predicted RBP	4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	RBM24	Q9BX46	236 aa	Known RBP	4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	JAM3	Q9BX67	310 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	TMEM59	Q9BXS4	323 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	PDE7B	Q9NP56	450 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	UBQLN4	Q9NRR5	601 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	PCDHB10	Q9UN67	800 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	POM121B	A6NF01	834 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR2W5	A6NFC9	320 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	SDCBP	O00560	298 aa	Predicted RBP	4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	CTDSPL	O15194	276 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	SCAF4	O95104	1147 aa	Known RBP	4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	CFD	P00746	253 aa	Predicted RBP	4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	SPP1	P10451	314 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	ALOX5AP	P20292	161 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	ENPP1	P22413	925 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	PPP1R1A	Q13522	171 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	IAH1	Q2TAA2	248 aa	Predicted RBP	4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	PRTG	Q2VWP7	1150 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	NCMAP	Q5T1S8	102 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	DCAF12L2	Q5VW00	463 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	LPCAT3	Q6P1A2	487 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	WDR88	Q6ZMY6	472 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	OVCH2	Q7RTZ1	564 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	ANGPTL5	Q86XS5	388 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	HSD17B11	Q8NBQ5	300 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR56B1	Q8NGI3	324 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR2G3	Q8NGZ4	309 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	NUDT9	Q9BW91	350 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	SLC25A31	Q9H0C2	315 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	PRO1933	Q9H354	126 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	UNKL	Q9H9P5	680 aa	Known RBP	4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	NECAP2	Q9NVZ3	263 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	KPTN	Q9Y664	436 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZFP92	A6NM28	416 aa		4.52	□□□□□ -1.69
SYNE2-223	ENST00000557005	C4orf47	A7E2U8	309 aa		4.52	□□□□□ -1.69
SYNE2-223	ENST00000557005	NUDT19	A8MXV4	375 aa		4.52	□□□□□ -1.69
SYNE2-223	ENST00000557005	PRRT4	C9JH25	899 aa		4.52	□□□□□ -1.69
SYNE2-223	ENST00000557005		H0Y8X5	98 aa		4.52	□□□□□ -1.69
SYNE2-223	ENST00000557005	OR2T1	O43869	369 aa		4.52	□□□□□ -1.69
SYNE2-223	ENST00000557005	PRAMEF4	O60810	478 aa		4.52	□□□□□ -1.69
SYNE2-223	ENST00000557005	LRP3	O75074	770 aa		4.52	□□□□□ -1.69
SYNE2-223	ENST00000557005	SLC2A1	P11166	492 aa		4.52	□□□□□ -1.69
SYNE2-223	ENST00000557005	CTGF	P29279	349 aa		4.52	□□□□□ -1.69
SYNE2-223	ENST00000557005	LIMS1	P48059	325 aa		4.52	□□□□□ -1.69
SYNE2-223	ENST00000557005	CLDN17	P56750	224 aa		4.52	□□□□□ -1.69
SYNE2-223	ENST00000557005	BTG2	P78543	158 aa		4.52	□□□□□ -1.69
SYNE2-223	ENST00000557005	NR0B2	Q15466	257 aa		4.52	□□□□□ -1.69
SYNE2-223	ENST00000557005	AADACL4	Q5VUY2	407 aa		4.52	□□□□□ -1.69
SYNE2-223	ENST00000557005	THSD4	Q6ZMP0	1018 aa		4.52	□□□□□ -1.69
SYNE2-223	ENST00000557005	SFTPA1	Q8IWL2	248 aa		4.52	□□□□□ -1.69
SYNE2-223	ENST00000557005	RCBTB1	Q8NDN9	531 aa		4.52	□□□□□ -1.69
SYNE2-223	ENST00000557005	TMEM104	Q8NE00	496 aa		4.52	□□□□□ -1.69
SYNE2-223	ENST00000557005	ZPLD1	Q8TCW7	415 aa		4.52	□□□□□ -1.69
SYNE2-223	ENST00000557005	SPTSSA	Q969W0	71 aa		4.52	□□□□□ -1.69

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