RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 GDF2Q9UK05 429 aaPredicted RBP12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 COL12A1Q99715 3063 aa12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 IGKV3-15P01624 115 aa12.21□□□□□ -0.45
VIPAS39-208ENST00000556412 CECR9P0C854 216 aa12.21□□□□□ -0.45
VIPAS39-208ENST00000556412 CCL2P13500 99 aa12.21□□□□□ -0.45
VIPAS39-208ENST00000556412 CCNOP22674 350 aa12.21□□□□□ -0.45
VIPAS39-208ENST00000556412 APEX1P27695 318 aaKnown RBP12.21□□□□□ -0.45
VIPAS39-208ENST00000556412 HCCSP53701 268 aa12.21□□□□□ -0.45
VIPAS39-208ENST00000556412 EIF2B1Q14232 305 aaKnown RBP12.21□□□□□ -0.45
VIPAS39-208ENST00000556412 SMN1Q16637 294 aaKnown RBP12.21□□□□□ -0.45
VIPAS39-208ENST00000556412 SLC25A30Q5SVS4 291 aa12.21□□□□□ -0.45
VIPAS39-208ENST00000556412 CFAP77Q6ZQR2 320 aa12.21□□□□□ -0.45
VIPAS39-208ENST00000556412 DCXRQ7Z4W1 244 aa12.21□□□□□ -0.45
VIPAS39-208ENST00000556412 SYT9Q86SS6 491 aa12.21□□□□□ -0.45
VIPAS39-208ENST00000556412 GJC3Q8NFK1 279 aa12.21□□□□□ -0.45
VIPAS39-208ENST00000556412 RNFT2Q96EX2 444 aa12.21□□□□□ -0.45
VIPAS39-208ENST00000556412 RADILQ96JH8 1075 aa12.21□□□□□ -0.45
VIPAS39-208ENST00000556412 KCNS3Q9BQ31 491 aa12.21□□□□□ -0.45
VIPAS39-208ENST00000556412 DPRXA6NFQ7 191 aa12.21□□□□□ -0.46
VIPAS39-208ENST00000556412 ABCD4O14678 606 aa12.21□□□□□ -0.46
VIPAS39-208ENST00000556412 SERPINA5P05154 406 aa12.21□□□□□ -0.46
VIPAS39-208ENST00000556412 ZNF14P17017 642 aaPredicted RBP12.21□□□□□ -0.46
VIPAS39-208ENST00000556412 CD40P25942 277 aa12.21□□□□□ -0.46
VIPAS39-208ENST00000556412 APLNRP35414 380 aa12.21□□□□□ -0.46
VIPAS39-208ENST00000556412 HTR5AP47898 357 aa12.21□□□□□ -0.46
VIPAS39-208ENST00000556412 MTNR1AP48039 350 aa12.21□□□□□ -0.46
VIPAS39-208ENST00000556412 ISL1P61371 349 aa12.21□□□□□ -0.46
VIPAS39-208ENST00000556412 SPOCK1Q08629 439 aa12.21□□□□□ -0.46
VIPAS39-208ENST00000556412 C1QTNF12Q5T7M4 302 aa12.21□□□□□ -0.46
VIPAS39-208ENST00000556412 USP51Q70EK9 711 aa12.21□□□□□ -0.46
VIPAS39-208ENST00000556412 SLC16A9Q7RTY1 509 aa12.21□□□□□ -0.46
VIPAS39-208ENST00000556412 THAP5Q7Z6K1 395 aa12.21□□□□□ -0.46
VIPAS39-208ENST00000556412 ZNF584Q8IVC4 421 aa12.21□□□□□ -0.46
VIPAS39-208ENST00000556412 CPEB3Q8NE35 698 aaKnown RBP12.21□□□□□ -0.46
VIPAS39-208ENST00000556412 SLC30A7Q8NEW0 376 aa12.21□□□□□ -0.46
VIPAS39-208ENST00000556412 THEM6Q8WUY1 208 aa12.21□□□□□ -0.46
VIPAS39-208ENST00000556412 CNBD2Q96M20 576 aa12.21□□□□□ -0.46
VIPAS39-208ENST00000556412 TTTY10Q9BZA0 68 aa12.21□□□□□ -0.46
VIPAS39-208ENST00000556412 MARCH7Q9H992 704 aa12.21□□□□□ -0.46
VIPAS39-208ENST00000556412 CENPMQ9NSP4 180 aa12.21□□□□□ -0.46
VIPAS39-208ENST00000556412 FBXL3Q9UKT7 428 aa12.21□□□□□ -0.46
VIPAS39-208ENST00000556412 HSPE1-MOB4S4R3N1 261 aa12.21□□□□□ -0.46
VIPAS39-208ENST00000556412 ADGRG4Q8IZF6 3080 aa12.2□□□□□ -0.46
VIPAS39-208ENST00000556412 A6NNC1 897 aa12.2□□□□□ -0.46
VIPAS39-208ENST00000556412 DEFB108AA8MXU0 73 aa12.2□□□□□ -0.46
VIPAS39-208ENST00000556412 SIAH2O43255 324 aa12.2□□□□□ -0.46
VIPAS39-208ENST00000556412 WBP4O75554 376 aaKnown RBP12.2□□□□□ -0.46
VIPAS39-208ENST00000556412 IGLV1-44P01699 117 aa12.2□□□□□ -0.46
VIPAS39-208ENST00000556412 PAX7P23759 505 aa12.2□□□□□ -0.46
VIPAS39-208ENST00000556412 PTAFRP25105 342 aa12.2□□□□□ -0.46
VIPAS39-208ENST00000556412 STOMP27105 288 aa12.2□□□□□ -0.46
VIPAS39-208ENST00000556412 ZNF91Q05481 1191 aa12.2□□□□□ -0.46
VIPAS39-208ENST00000556412 GGTLC2Q14390 218 aa12.2□□□□□ -0.46
VIPAS39-208ENST00000556412 CCDC92Q53HC0 331 aaPredicted RBP12.2□□□□□ -0.46
VIPAS39-208ENST00000556412 ADAM5Q6NVV9 412 aa12.2□□□□□ -0.46
VIPAS39-208ENST00000556412 SLC22A25Q6T423 547 aa12.2□□□□□ -0.46
VIPAS39-208ENST00000556412 VASH1Q7L8A9 365 aaPredicted RBP12.2□□□□□ -0.46
VIPAS39-208ENST00000556412 MAP6Q96JE9 813 aa12.2□□□□□ -0.46
VIPAS39-208ENST00000556412 HS3ST6Q96QI5 342 aa12.2□□□□□ -0.46
VIPAS39-208ENST00000556412 TBX5Q99593 518 aa12.2□□□□□ -0.46
VIPAS39-208ENST00000556412 WACQ9BTA9 647 aa12.2□□□□□ -0.46
VIPAS39-208ENST00000556412 C1orf198Q9H425 327 aa12.2□□□□□ -0.46
VIPAS39-208ENST00000556412 ADGRL4Q9HBW9 690 aa12.2□□□□□ -0.46
VIPAS39-208ENST00000556412 CRNNQ9UBG3 495 aaPredicted RBP12.2□□□□□ -0.46
VIPAS39-208ENST00000556412 LAMP5Q9UJQ1 280 aa12.2□□□□□ -0.46
VIPAS39-208ENST00000556412 POU2F3Q9UKI9 436 aa12.2□□□□□ -0.46
VIPAS39-208ENST00000556412 RAB26Q9ULW5 256 aa12.2□□□□□ -0.46
VIPAS39-208ENST00000556412 FREM1Q5H8C1 2179 aa12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 ALPK2Q86TB3 2170 aa12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 C5orf49A4QMS7 147 aa12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 PTHP01270 115 aa12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 CRYAAP02489 173 aa12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 CD3EP07766 207 aa12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 SBK2P0C263 348 aa12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 DBTP11182 482 aaKnown RBP12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 GDI2P50395 445 aaKnown RBP12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 NR1H2P55055 460 aa12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 POU4F2Q12837 409 aa12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 CDK5R2Q13319 367 aa12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 RAB35Q15286 201 aa12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 TAF13Q15543 124 aa12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 TBC1D28Q2M2D7 210 aa12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 TEX30Q5JUR7 227 aa12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 ELFN2Q5R3F8 820 aa12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 NCMAPQ5T1S8 102 aa12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 ZNF787Q6DD87 383 aa12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 SLC35F2Q8IXU6 374 aa12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 FAM169BQ8N8A8 192 aa12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 OR10H4Q8NGA5 316 aa12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 OR4F15Q8NGB8 312 aa12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 OTOSQ8NHW6 89 aa12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 SLAMF6Q96DU3 332 aa12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 ZNF75AQ96N20 296 aa12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 ABHD6Q9BV23 337 aa12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 ANKRD60Q9BZ19 345 aa12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 Q9H521 79 aa12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 CDH20Q9HBT6 801 aa12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 HAO2Q9NYQ3 351 aa12.19□□□□□ -0.46
VIPAS39-208ENST00000556412 KLHDC2Q9Y2U9 406 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms