RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 EMC7Q9NPA0 242 aa12.4□□□□□ -0.42
CCDC88C-207ENST00000554051 CMC2Q9NRP2 79 aa12.4□□□□□ -0.42
CCDC88C-207ENST00000554051 SLCO1C1Q9NYB5 712 aa12.4□□□□□ -0.42
CCDC88C-207ENST00000554051 PLEK2Q9NYT0 353 aa12.4□□□□□ -0.42
CCDC88C-207ENST00000554051 ARID1AO14497 2285 aa12.4□□□□□ -0.42
CCDC88C-207ENST00000554051 F8P00451 2351 aa12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 A0A1W2PPW3 197 aa12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 C5orf49A4QMS7 147 aa12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 OR6C68A6NDL8 312 aa12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 OR6C6A6NF89 314 aa12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 SYNGR3O43761 229 aa12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 TIPRLO75663 272 aa12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 HLA-DQA2P01906 255 aa12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 HMGN1P05114 100 aa12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 UCP2P55851 309 aa12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 KLF3P57682 345 aaPredicted RBP12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 ACTR3P61158 418 aa12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 ECH1Q13011 328 aa12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 CCNIQ14094 377 aa12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 CLEC12BQ2HXU8 276 aa12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 MST1LQ2TV78 715 aa12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 ZMAT1Q5H9K5 638 aa12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 SLC35F1Q5T1Q4 408 aa12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 FAHD1Q6P587 224 aa12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 SLC37A3Q8NCC5 494 aa12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 CPEB3Q8NE35 698 aaKnown RBP12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 OR2AJ1Q8NGZ0 328 aa12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 AKR7LQ8NHP1 331 aa12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 SNX33Q8WV41 574 aa12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 NEU4Q8WWR8 484 aaPredicted RBP12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 UTP4Q969X6 686 aaKnown RBP12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 C18orf12Q96KH6 178 aa12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 COQ7Q99807 217 aa12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 GABARAPL1Q9H0R8 117 aa12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 MS4A5Q9H3V2 200 aa12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 PAPOLBQ9NRJ5 636 aaKnown RBP12.39□□□□□ -0.43
CCDC88C-207ENST00000554051 NDUFS8O00217 210 aa12.38□□□□□ -0.43
CCDC88C-207ENST00000554051 GPRIN2O60269 458 aa12.38□□□□□ -0.43
CCDC88C-207ENST00000554051 ABHD16AO95870 558 aa12.38□□□□□ -0.43
CCDC88C-207ENST00000554051 LCKP06239 509 aa12.38□□□□□ -0.43
CCDC88C-207ENST00000554051 FAM157BP0CG42 384 aa12.38□□□□□ -0.43
CCDC88C-207ENST00000554051 ZNF250P15622 560 aa12.38□□□□□ -0.43
CCDC88C-207ENST00000554051 ZNF823P16415 610 aa12.38□□□□□ -0.43
CCDC88C-207ENST00000554051 ZNF23P17027 643 aa12.38□□□□□ -0.43
CCDC88C-207ENST00000554051 CCNOP22674 350 aa12.38□□□□□ -0.43
CCDC88C-207ENST00000554051 GCH1P30793 250 aa12.38□□□□□ -0.43
CCDC88C-207ENST00000554051 TEKQ02763 1124 aa12.38□□□□□ -0.43
CCDC88C-207ENST00000554051 FAM209AQ5JX71 171 aa12.38□□□□□ -0.43
CCDC88C-207ENST00000554051 ZNF774Q6NX45 483 aa12.38□□□□□ -0.43
CCDC88C-207ENST00000554051 VASH1Q7L8A9 365 aaPredicted RBP12.38□□□□□ -0.43
CCDC88C-207ENST00000554051 BIVMQ86UB2 503 aa12.38□□□□□ -0.43
CCDC88C-207ENST00000554051 OR4Q3Q8NH05 313 aa12.38□□□□□ -0.43
CCDC88C-207ENST00000554051 SYNPRQ8TBG9 265 aa12.38□□□□□ -0.43
CCDC88C-207ENST00000554051 PLEKHA8Q96JA3 519 aa12.38□□□□□ -0.43
CCDC88C-207ENST00000554051 COX4I2Q96KJ9 171 aa12.38□□□□□ -0.43
CCDC88C-207ENST00000554051 TSSK2Q96PF2 358 aa12.38□□□□□ -0.43
CCDC88C-207ENST00000554051 RHNO1Q9BSD3 238 aa12.38□□□□□ -0.43
CCDC88C-207ENST00000554051 RBM4Q9BWF3 364 aaKnown RBP12.38□□□□□ -0.43
CCDC88C-207ENST00000554051 CDADC1Q9BWV3 514 aa12.38□□□□□ -0.43
CCDC88C-207ENST00000554051 SLC25A19Q9HC21 320 aa12.38□□□□□ -0.43
CCDC88C-207ENST00000554051 SRA1Q9HD15 236 aaKnown RBP12.38□□□□□ -0.43
CCDC88C-207ENST00000554051 DLL4Q9NR61 685 aa12.38□□□□□ -0.43
CCDC88C-207ENST00000554051 TBCCD1Q9NVR7 557 aa12.38□□□□□ -0.43
CCDC88C-207ENST00000554051 REV1Q9UBZ9 1251 aa12.38□□□□□ -0.43
CCDC88C-207ENST00000554051 IGLV3-9A0A075B6K5 115 aa12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 G3V2T6 193 aa12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 DCTN6O00399 190 aa12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 F12P00748 615 aaPredicted RBP12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 TP53P04637 393 aaPredicted RBP12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 FMO3P31513 532 aa12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 LIPAP38571 399 aa12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 ERFP50548 548 aa12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 ESRRGP62508 458 aa12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 HIST1H3AP68431 136 aa12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 CRMP1Q14194 572 aa12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 ZNF718Q3SXZ3 478 aa12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 ELFN2Q5R3F8 820 aa12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 HIST2H3PS2Q5TEC6 136 aa12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 UGT2A3Q6UWM9 527 aa12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 DNM1P46Q6ZS02 220 aa12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 HIST2H3AQ71DI3 136 aa12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 TMEM179BQ7Z7N9 219 aa12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 PAQR4Q8N4S7 273 aaPredicted RBP12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 OR1J1Q8NGS3 322 aa12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 OR1F12Q8NHA8 337 aa12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 CENPNQ96H22 339 aaPredicted RBP12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 C4orf45Q96LM5 186 aa12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 DOK1Q99704 481 aa12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 VRK1Q99986 396 aaPredicted RBP12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 MRPL37Q9BZE1 423 aaKnown RBP12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 NMNAT2Q9BZQ4 307 aa12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 NTN4Q9HB63 628 aa12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 CYSLTR2Q9NS75 346 aa12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 KRT84Q9NSB2 600 aa12.37□□□□□ -0.43
CCDC88C-207ENST00000554051 USF3Q68DE3 2245 aa12.36□□□□□ -0.43
CCDC88C-207ENST00000554051 LOC100509620A0A075B734 347 aa12.36□□□□□ -0.43
CCDC88C-207ENST00000554051 PRODHO43272 600 aa12.36□□□□□ -0.43
CCDC88C-207ENST00000554051 SSX4O60224 188 aa12.36□□□□□ -0.43
CCDC88C-207ENST00000554051 INHBBP09529 407 aa12.36□□□□□ -0.43
CCDC88C-207ENST00000554051 CCL2P13500 99 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms