RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 BATF3Q9NR55 127 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 THUMPD1Q9NXG2 353 aaKnown RBP1.71□□□□□ -2.14
VRK1-202ENST00000553683 EURLQ9NYK6 297 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 CALYQ9NYX4 217 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 STX18Q9P2W9 335 aaKnown RBP1.71□□□□□ -2.14
VRK1-202ENST00000553683 RNF14Q9UBS8 474 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 GGA2Q9UJY4 613 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 ZNF835Q9Y2P0 537 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 POLDIP2Q9Y2S7 368 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 LRRC42Q9Y546 428 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 STRCQ7RTU9 1775 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 PTPRGP23470 1445 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 DIP2BQ9P265 1576 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 GPR179Q6PRD1 2367 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 MN1Q10571 1320 aaPredicted RBP1.7□□□□□ -2.14
VRK1-202ENST00000553683 IGSF9BQ9UPX0 1349 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 TCRBV9S1A1TA0A576 114 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 TMEM120BA0PK00 339 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 GOLGA8OA6NCC3 632 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 ARGFXA6NJG6 315 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 GABRR3A8MPY1 467 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 A8MXQ7 604 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 FHAD1B1AJZ9 1412 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 SPECC1L-ADORA2AF8WAN1 911 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 GOLGA8NF8WBI6 632 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 H0Y8G0 127 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 CD5LO43866 347 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 MTX2O75431 263 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 SCGNO76038 276 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 TGM6O95932 706 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 IL6P05231 212 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 CLTAP09496 248 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 UQCRFS1P1P0C7P4 283 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 GKN3PP0CG01 181 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 RALBP11234 206 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 PGAM1P18669 254 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 TCN1P20061 433 aaPredicted RBP1.7□□□□□ -2.14
VRK1-202ENST00000553683 DRD5P21918 477 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 PCMT1P22061 227 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 TUBG1P23258 451 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 LAP3P28838 519 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 BTCP35070 178 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 RORAP35398 523 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 NUP62P37198 522 aaPredicted RBP1.7□□□□□ -2.14
VRK1-202ENST00000553683 KIR3DL2P43630 455 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 GPR4P46093 362 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 RGS4P49798 205 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 CLDN8P56748 225 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 RAB14P61106 215 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 FADDQ13158 208 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 ITGB3BPQ13352 177 aaPredicted RBP1.7□□□□□ -2.14
VRK1-202ENST00000553683 PMS2P3Q13401 168 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 WDR43Q15061 677 aaKnown RBP eCLIP1.7□□□□□ -2.14
VRK1-202ENST00000553683 ZMYND11Q15326 602 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 PRSS8Q16651 343 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 HSDL1Q3SXM5 330 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 CHRFAM7AQ494W8 412 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 PRAMEF20Q5VT98 475 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 SPECC1LQ69YQ0 1117 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 ZNF836Q6ZNA1 936 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 FAM92BQ6ZTR7 304 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 TRMT10CQ7L0Y3 403 aaKnown RBP1.7□□□□□ -2.14
VRK1-202ENST00000553683 COPS6Q7L5N1 327 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 EFL1Q7Z2Z2 1120 aaKnown RBP1.7□□□□□ -2.14
VRK1-202ENST00000553683 NEGR1Q7Z3B1 354 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 KIF27Q86VH2 1401 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 CLVS1Q8IUQ0 354 aaPredicted RBP1.7□□□□□ -2.14
VRK1-202ENST00000553683 OFCC1Q8IZS5 231 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 PGAM4Q8N0Y7 254 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 ZNF709Q8N972 641 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 EIF1ADQ8N9N8 165 aaKnown RBP1.7□□□□□ -2.14
VRK1-202ENST00000553683 OR7G1Q8NGA0 311 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 OR8J1Q8NGP2 316 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 AKR7LQ8NHP1 331 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 TRMT10AQ8TBZ6 339 aaKnown RBP1.7□□□□□ -2.14
VRK1-202ENST00000553683 LKAAEAR1Q8TD35 194 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 THRSPQ92748 146 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 FBXO32Q969P5 355 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 ZNF641Q96N77 438 aaPredicted RBP1.7□□□□□ -2.14
VRK1-202ENST00000553683 TSSK3Q96PN8 268 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 OR2A5Q96R48 311 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 CYTH2Q99418 400 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 KCNS3Q9BQ31 491 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 CALN1Q9BXU9 219 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 PARD6GQ9BYG4 376 aaPredicted RBP1.7□□□□□ -2.14
VRK1-202ENST00000553683 DRC3Q9H069 523 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 METTL7AQ9H8H3 244 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 CYP3A43Q9HB55 503 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 ZFP14Q9HCL3 533 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 MRPL47Q9HD33 250 aaKnown RBP1.7□□□□□ -2.14
VRK1-202ENST00000553683 TUBG2Q9NRH3 451 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 BAHCC1Q9P281 2608 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 ENOPH1Q9UHY7 261 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 CD84Q9UIB8 345 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 SAMHD1Q9Y3Z3 626 aaKnown RBP1.7□□□□□ -2.14
VRK1-202ENST00000553683 WIF1Q9Y5W5 379 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 EP400Q96L91 3159 aa1.7□□□□□ -2.14
VRK1-202ENST00000553683 NHSL1Q5SYE7 1610 aa1.69□□□□□ -2.14
VRK1-202ENST00000553683 PDE4DIPQ5VU43 2346 aa1.69□□□□□ -2.14
VRK1-202ENST00000553683 ATP10AO60312 1499 aa1.69□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms