RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 SORDQ00796 357 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 BDH1Q02338 343 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 SCRN3Q0VDG4 424 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 DBPQ10586 325 aaPredicted RBP8.37□□□□□ -1.07
LIMA1-211ENST00000552338 MRPL28Q13084 256 aaKnown RBP8.37□□□□□ -1.07
LIMA1-211ENST00000552338 SGCAQ16586 387 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 TBRG1Q3YBR2 411 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 SLC36A2Q495M3 483 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 CCDC92Q53HC0 331 aaPredicted RBP8.37□□□□□ -1.07
LIMA1-211ENST00000552338 FDX2Q6P4F2 183 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 ZNF773Q6PK81 442 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 NCCRP1Q6ZVX7 275 aaPredicted RBP8.37□□□□□ -1.07
LIMA1-211ENST00000552338 AHSA2Q719I0 299 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 SLC16A14Q7RTX9 510 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.37□□□□□ -1.07
LIMA1-211ENST00000552338 ERI1Q8IV48 349 aaKnown RBP8.37□□□□□ -1.07
LIMA1-211ENST00000552338 SKA3Q8IX90 412 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 ZNF679Q8IYX0 411 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 SPARTQ8N0X7 666 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 STX19Q8N4C7 294 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 ACBD4Q8NC06 268 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 STEAP2Q8NFT2 490 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 OR10H5Q8NGA6 315 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 OR6N2Q8NGY6 317 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 PRR7Q8TB68 274 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 RPS4Y2Q8TD47 263 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 ITLN2Q8WWU7 325 aaPredicted RBP8.37□□□□□ -1.07
LIMA1-211ENST00000552338 RNASE6Q93091 150 aaKnown RBP8.37□□□□□ -1.07
LIMA1-211ENST00000552338 OTULINQ96BN8 352 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 MAP6Q96JE9 813 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 OR8B4Q96RC9 309 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 ABHD6Q9BV23 337 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 HEATR1Q9H583 2144 aaKnown RBP8.37□□□□□ -1.07
LIMA1-211ENST00000552338 NIPAL2Q9H841 368 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 SEC61A2Q9H9S3 476 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 SH3BGRL2Q9UJC5 107 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 FBXL3Q9UKT7 428 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 COPS3Q9UNS2 423 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 AMDHD2Q9Y303 409 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 LSM2Q9Y333 95 aaKnown RBP8.37□□□□□ -1.07
LIMA1-211ENST00000552338 TIMM10BQ9Y5J6 103 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 SLC25A15Q9Y619 301 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 ACOD1A6NK06 481 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 EIF4E1BA6NMX2 242 aaKnown RBP8.36□□□□□ -1.07
LIMA1-211ENST00000552338 ZNF670-ZNF695F2Z2N8 137 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 C16orf97H3BN30 126 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 SYNGR3O43761 229 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 SMNDC1O75940 238 aaKnown RBP eCLIP8.36□□□□□ -1.07
LIMA1-211ENST00000552338 IGLV1-44P01699 117 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 HLA-DQA2P01906 255 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 CD1AP06126 327 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 B4GALT1P15291 398 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 CBR1P16152 277 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 CRYGSP22914 178 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 UGT2B10P36537 528 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 ATP6V1E1P36543 226 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 OPRL1P41146 370 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 ACTA2P62736 377 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 ACTG2P63267 376 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 PSG4Q00888 419 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 EMX1Q04741 257 aaPredicted RBP8.36□□□□□ -1.07
LIMA1-211ENST00000552338 ECH1Q13011 328 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 MEP1BQ16820 701 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 RSPO1Q2MKA7 263 aaPredicted RBP8.36□□□□□ -1.07
LIMA1-211ENST00000552338 UBE2UQ5VVX9 321 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 KCTD18Q6PI47 426 aaPredicted RBP8.36□□□□□ -1.07
LIMA1-211ENST00000552338 KLHL24Q6TFL4 600 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 PLEKHG7Q6ZR37 379 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 BHLHA15Q7RTS1 189 aaPredicted RBP8.36□□□□□ -1.07
LIMA1-211ENST00000552338 CXorf67Q86X51 503 aaPredicted RBP8.36□□□□□ -1.07
LIMA1-211ENST00000552338 SVOPQ8N4V2 548 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 OR10S1Q8NGN2 331 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 OR52N5Q8NH56 324 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 FGFBP3Q8TAT2 258 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 NANOS1Q8WY41 292 aaKnown RBP8.36□□□□□ -1.07
LIMA1-211ENST00000552338 SGCDQ92629 289 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 ITFG2Q969R8 447 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 RNF166Q96A37 237 aaPredicted RBP8.36□□□□□ -1.07
LIMA1-211ENST00000552338 LRRC46Q96FV0 321 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 MRPL48Q96GC5 212 aaKnown RBP8.36□□□□□ -1.07
LIMA1-211ENST00000552338 COQ7Q99807 217 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 CDADC1Q9BWV3 514 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 HDHD2Q9H0R4 259 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 KCNN2Q9H2S1 579 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 ERVK-18Q9QC07 812 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 ASH2LQ9UBL3 628 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 LAMP5Q9UJQ1 280 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 GDF2Q9UK05 429 aaPredicted RBP8.36□□□□□ -1.07
LIMA1-211ENST00000552338 ZFYVE26Q68DK2 2539 aa8.36□□□□□ -1.07
LIMA1-211ENST00000552338 DAPL1A0PJW8 107 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 CIB4A0PJX0 185 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 ZNF503-AS2A6NEH8 195 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 OR6C6A6NF89 314 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 ZNF878C9JN71 531 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 J3QW42 95 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 SGCEO43556 437 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 SRSF10O75494 262 aaKnown RBP8.35□□□□□ -1.07
LIMA1-211ENST00000552338 LYZL6O75951 148 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 CLDN14O95500 239 aa8.35□□□□□ -1.07
LIMA1-211ENST00000552338 WNT11O96014 354 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms