RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 SPINT3P49223 89 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 STARP49675 285 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 MFAP2P55001 183 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 VSX2P58304 361 aaPredicted RBP3.09□□□□□ -1.91
LIMA1-208ENST00000551691 YWHAEP62258 255 aaKnown RBP3.09□□□□□ -1.91
LIMA1-208ENST00000551691 SRPXP78539 464 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 RPL36AP83881 106 aaKnown RBP3.09□□□□□ -1.91
LIMA1-208ENST00000551691 TGM3Q08188 693 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 ARL16Q0P5N6 197 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 XRCC4Q13426 336 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 TMED1Q13445 227 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 SLC5A12Q1EHB4 618 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 MS4A18Q3C1V0 323 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 ZNF876PQ49A33 203 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 SPANXN2Q5MJ10 180 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 FAM120AOSQ5T036 256 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 PDZK1Q5T2W1 519 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 HENMT1Q5T8I9 393 aaKnown RBP3.09□□□□□ -1.91
LIMA1-208ENST00000551691 REP15Q6BDI9 236 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 EIF3MQ7L2H7 374 aaKnown RBP3.09□□□□□ -1.91
LIMA1-208ENST00000551691 NUFIP2Q7Z417 695 aaKnown RBP3.09□□□□□ -1.91
LIMA1-208ENST00000551691 IFNEQ86WN2 208 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 CATSPERDQ86XM0 798 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 LIX1Q8N485 282 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 GPR26Q8NDV2 337 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 SPATA4Q8NEY3 305 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 OR10A7Q8NGE5 316 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 OR4D5Q8NGN0 318 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 KCNG3Q8TAE7 436 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 ZNF671Q8TAW3 534 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 M1APQ8TC57 530 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 AENQ8WTP8 325 aaKnown RBP3.09□□□□□ -1.91
LIMA1-208ENST00000551691 IL1F10Q8WWZ1 152 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 PIGCQ92535 297 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 ADIPOR1Q96A54 375 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 ZNF524Q96C55 264 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 RAB3CQ96E17 227 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 ZMYND19Q96E35 227 aaPredicted RBP3.09□□□□□ -1.91
LIMA1-208ENST00000551691 RBMXL1Q96E39 390 aaKnown RBP3.09□□□□□ -1.91
LIMA1-208ENST00000551691 PIK3IP1Q96FE7 263 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 COQ2Q96H96 371 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 GMPPAQ96IJ6 420 aaPredicted RBP3.09□□□□□ -1.91
LIMA1-208ENST00000551691 C12orf66Q96MD2 445 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 FAM218AQ96MZ4 157 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 MCCC1Q96RQ3 725 aaPredicted RBP3.09□□□□□ -1.91
LIMA1-208ENST00000551691 LRRC19Q9H756 370 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 EXO5Q9H790 373 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 ZNF696Q9H7X3 374 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 WDR54Q9H977 334 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 ADGRL4Q9HBW9 690 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 MRM3Q9HC36 420 aaKnown RBP3.09□□□□□ -1.91
LIMA1-208ENST00000551691 BFARQ9NZS9 450 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 THYN1Q9P016 225 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 ICAM5Q9UMF0 924 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 COQ4Q9Y3A0 265 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 NPTNQ9Y639 398 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 DNAH9Q9NYC9 4486 aa3.09□□□□□ -1.92
LIMA1-208ENST00000551691 IGHV4-30-2A0A087WSY4 118 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 SNTNA6NMZ2 147 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 GABRR3A8MPY1 467 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 DEFB108AA8MXU0 73 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 G3V3Y1 287 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 G3V4G9 280 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 H3BQV1 296 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 DFFAO00273 331 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 OR7A17O14581 309 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 TCF21O43680 179 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 CALUO43852 315 aaPredicted RBP3.08□□□□□ -1.92
LIMA1-208ENST00000551691 TRIM3O75382 744 aaPredicted RBP3.08□□□□□ -1.92
LIMA1-208ENST00000551691 PRB2P02812 416 aaPredicted RBP3.08□□□□□ -1.92
LIMA1-208ENST00000551691 OPN1LWP04000 364 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 CD48P09326 243 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 PGCP20142 388 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 IMPDH1P20839 514 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 ZNF10P21506 573 aaPredicted RBP3.08□□□□□ -1.92
LIMA1-208ENST00000551691 CXCR2P25025 360 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 ATP1B3P54709 279 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 BST1Q10588 318 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 IL18Q14116 193 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 DPYSL2Q16555 572 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 TMEM249Q2WGJ8 235 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 GGTA1PQ4G0N0 100 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 C1orf185Q5T7R7 199 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 OR2A2Q6IF42 318 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 H3F3CQ6NXT2 135 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 TMEM220Q6QAJ8 160 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 CCBE1Q6UXH8 406 aaPredicted RBP3.08□□□□□ -1.92
LIMA1-208ENST00000551691 RNF130Q86XS8 419 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 TRAPPC5Q8IUR0 188 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 CLEC4FQ8N1N0 589 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 C2orf73Q8N5S3 287 aaPredicted RBP3.08□□□□□ -1.92
LIMA1-208ENST00000551691 OR1F12Q8NHA8 337 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 LCN9Q8WX39 176 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 WFIKKN1Q96NZ8 548 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 ZNF300Q96RE9 604 aaPredicted RBP3.08□□□□□ -1.92
LIMA1-208ENST00000551691 CLCC1Q96S66 551 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 OVOL2Q9BRP0 275 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 CENPKQ9BS16 269 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 TIMM29Q9BSF4 260 aa3.08□□□□□ -1.92
LIMA1-208ENST00000551691 SPATA16Q9BXB7 569 aa3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms