RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 FGF9P31371 208 aaPredicted RBP11.41□□□□□ -0.58
COL4A6-209ENST00000545689 GABRA2P47869 451 aa11.41□□□□□ -0.58
COL4A6-209ENST00000545689 NPY4RP50391 375 aa11.41□□□□□ -0.58
COL4A6-209ENST00000545689 STAC2Q6ZMT1 411 aa11.41□□□□□ -0.58
COL4A6-209ENST00000545689 CMTM4Q8IZR5 234 aa11.41□□□□□ -0.58
COL4A6-209ENST00000545689 DMBX1Q8NFW5 382 aa11.41□□□□□ -0.58
COL4A6-209ENST00000545689 OR4A16Q8NH70 328 aa11.41□□□□□ -0.58
COL4A6-209ENST00000545689 RTL8AQ9BWD3 113 aa11.41□□□□□ -0.58
COL4A6-209ENST00000545689 PLEKHF2Q9H8W4 249 aa11.41□□□□□ -0.58
COL4A6-209ENST00000545689 CALHM2Q9HA72 323 aa11.41□□□□□ -0.58
COL4A6-209ENST00000545689 SMCO4Q9NRQ5 59 aa11.41□□□□□ -0.58
COL4A6-209ENST00000545689 QPCTLQ9NXS2 382 aa11.41□□□□□ -0.58
COL4A6-209ENST00000545689 KPTNQ9Y664 436 aa11.41□□□□□ -0.58
COL4A6-209ENST00000545689 TSTD3H0UI37 97 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 H0Y8X5 98 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 PTGER4P35408 488 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 CCR2P41597 374 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 PPP2CBP62714 309 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 PPP2CAP67775 309 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 PRTGQ2VWP7 1150 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 OR52N5Q8NH56 324 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 SEH1LQ96EE3 360 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 SDSLQ96GA7 329 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 WDFY2Q96P53 400 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 DOK1Q99704 481 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 HIPK2Q9H2X6 1198 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 SCAF4O95104 1147 aaKnown RBP11.4□□□□□ -0.58
COL4A6-209ENST00000545689 EMDP50402 254 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 WNT3P56703 355 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 CDK5Q00535 292 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 NKG7Q16617 165 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 TMEM81Q6P7N7 255 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 TTC9Q92623 222 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 OR2A14Q96R47 310 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 TWSG1Q9GZX9 223 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 NXPH2O95156 264 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 MYOGP15173 224 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 SMAD4Q13485 552 aaKnown RBP11.4□□□□□ -0.58
COL4A6-209ENST00000545689 SOWAHCQ53LP3 525 aaPredicted RBP11.4□□□□□ -0.58
COL4A6-209ENST00000545689 C6orf15Q6UXA7 325 aaPredicted RBP11.4□□□□□ -0.58
COL4A6-209ENST00000545689 ACOT7LQ6ZUV0 252 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 YIPF5Q969M3 257 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 IL20Q9NYY1 176 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 MED16Q9Y2X0 877 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 HOXA1P49639 335 aaPredicted RBP11.4□□□□□ -0.58
COL4A6-209ENST00000545689 TAGLNQ01995 201 aaKnown RBP11.4□□□□□ -0.58
COL4A6-209ENST00000545689 TOMM34Q15785 309 aaPredicted RBP11.4□□□□□ -0.58
COL4A6-209ENST00000545689 BAK1Q16611 211 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 C9orf135Q5VTT2 229 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 TFAP2EQ6VUC0 442 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 CPEB2Q7Z5Q1 589 aaKnown RBP11.4□□□□□ -0.58
COL4A6-209ENST00000545689 C3orf49Q96BT1 292 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 NRSN2Q9GZP1 204 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 ZNF225Q9UK10 706 aa11.4□□□□□ -0.58
COL4A6-209ENST00000545689 TUBGCP6Q96RT7 1819 aa11.4□□□□□ -0.59
COL4A6-209ENST00000545689 SPINT2O43291 252 aa11.4□□□□□ -0.59
COL4A6-209ENST00000545689 ADRA2CP18825 462 aa11.4□□□□□ -0.59
COL4A6-209ENST00000545689 HMGA2P52926 109 aa11.4□□□□□ -0.59
COL4A6-209ENST00000545689 TMPRSS11FQ6ZWK6 438 aa11.4□□□□□ -0.59
COL4A6-209ENST00000545689 DDOQ99489 341 aa11.4□□□□□ -0.59
COL4A6-209ENST00000545689 OR11A1Q9GZK7 315 aa11.4□□□□□ -0.59
COL4A6-209ENST00000545689 DYNLRB1Q9NP97 96 aa11.4□□□□□ -0.59
COL4A6-209ENST00000545689 SLC17A5Q9NRA2 495 aa11.4□□□□□ -0.59
COL4A6-209ENST00000545689 FBXL4Q9UKA2 621 aa11.4□□□□□ -0.59
COL4A6-209ENST00000545689 YARS2Q9Y2Z4 477 aaKnown RBP11.4□□□□□ -0.59
COL4A6-209ENST00000545689 LTBP4Q8N2S1 1624 aa11.4□□□□□ -0.59
COL4A6-209ENST00000545689 RPS10-NUDT3A0A1W2PQS6 291 aa11.39□□□□□ -0.59
COL4A6-209ENST00000545689 IDSB3KWA1 339 aa11.39□□□□□ -0.59
COL4A6-209ENST00000545689 XRCC2O43543 280 aa11.39□□□□□ -0.59
COL4A6-209ENST00000545689 FOLR1P15328 257 aa11.39□□□□□ -0.59
COL4A6-209ENST00000545689 ARR3P36575 388 aa11.39□□□□□ -0.59
COL4A6-209ENST00000545689 GPR3P46089 330 aa11.39□□□□□ -0.59
COL4A6-209ENST00000545689 RPS10P46783 165 aaKnown RBP11.39□□□□□ -0.59
COL4A6-209ENST00000545689 SLC25A1P53007 311 aa11.39□□□□□ -0.59
COL4A6-209ENST00000545689 HTRA3P83110 453 aa11.39□□□□□ -0.59
COL4A6-209ENST00000545689 FZD2Q14332 565 aa11.39□□□□□ -0.59
COL4A6-209ENST00000545689 SOHLH1Q5JUK2 328 aa11.39□□□□□ -0.59
COL4A6-209ENST00000545689 ASTLQ6HA08 431 aaPredicted RBP11.39□□□□□ -0.59
COL4A6-209ENST00000545689 OR52H1Q8NGJ2 320 aa11.39□□□□□ -0.59
COL4A6-209ENST00000545689 SMIM4Q8WVI0 70 aa11.39□□□□□ -0.59
COL4A6-209ENST00000545689 TAF9BQ9HBM6 251 aa11.39□□□□□ -0.59
COL4A6-209ENST00000545689 SLC39A9Q9NUM3 307 aa11.39□□□□□ -0.59
COL4A6-209ENST00000545689 SIRT5Q9NXA8 310 aa11.39□□□□□ -0.59
COL4A6-209ENST00000545689 SLC5A6Q9Y289 635 aa11.39□□□□□ -0.59
COL4A6-209ENST00000545689 GLAP06280 429 aa11.39□□□□□ -0.59
COL4A6-209ENST00000545689 POU2F2P09086 479 aa11.39□□□□□ -0.59
COL4A6-209ENST00000545689 QDPRP09417 244 aa11.39□□□□□ -0.59
COL4A6-209ENST00000545689 ABOP16442 354 aa11.39□□□□□ -0.59
COL4A6-209ENST00000545689 MSRB3Q8IXL7 192 aa11.39□□□□□ -0.59
COL4A6-209ENST00000545689 OR13C8Q8NGS7 320 aa11.39□□□□□ -0.59
COL4A6-209ENST00000545689 ZNF416Q9BWM5 594 aa11.39□□□□□ -0.59
COL4A6-209ENST00000545689 GNG12Q9UBI6 72 aa11.39□□□□□ -0.59
COL4A6-209ENST00000545689 THSD7AQ9UPZ6 1657 aa11.39□□□□□ -0.59
COL4A6-209ENST00000545689 OTOL1A6NHN0 477 aaPredicted RBP11.39□□□□□ -0.59
COL4A6-209ENST00000545689 NKX6-3A6NJ46 265 aa11.39□□□□□ -0.59
COL4A6-209ENST00000545689 FBXL6Q8N531 539 aa11.39□□□□□ -0.59
COL4A6-209ENST00000545689 OR51A4Q8NGJ6 313 aa11.39□□□□□ -0.59
COL4A6-209ENST00000545689 TCEAL2Q9H3H9 227 aaPredicted RBP11.39□□□□□ -0.59
COL4A6-209ENST00000545689 LTB4R2Q9NPC1 389 aa11.39□□□□□ -0.59
COL4A6-209ENST00000545689 PRDM7Q9NQW5 492 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms