RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 M0R1B8 84 aa14.9□□□□□ -0.02
LIG1-204ENST00000542460 PTHP01270 115 aa14.9□□□□□ -0.02
LIG1-204ENST00000542460 IGLV1-44P01699 117 aa14.9□□□□□ -0.02
LIG1-204ENST00000542460 SERPINA5P05154 406 aa14.9□□□□□ -0.02
LIG1-204ENST00000542460 SPARCP09486 303 aa14.9□□□□□ -0.02
LIG1-204ENST00000542460 PTAFRP25105 342 aa14.9□□□□□ -0.02
LIG1-204ENST00000542460 COL8A1P27658 744 aa14.9□□□□□ -0.02
LIG1-204ENST00000542460 HIST1H3AP68431 136 aa14.9□□□□□ -0.02
LIG1-204ENST00000542460 BEX5Q5H9J7 111 aa14.9□□□□□ -0.02
LIG1-204ENST00000542460 PABPC1L2AQ5JQF8 200 aa14.9□□□□□ -0.02
LIG1-204ENST00000542460 HIST2H3PS2Q5TEC6 136 aa14.9□□□□□ -0.02
LIG1-204ENST00000542460 SLC18B1Q6NT16 456 aa14.9□□□□□ -0.02
LIG1-204ENST00000542460 TMEM108Q6UXF1 575 aa14.9□□□□□ -0.02
LIG1-204ENST00000542460 HIST2H3AQ71DI3 136 aa14.9□□□□□ -0.02
LIG1-204ENST00000542460 SHFQ7M4L6 423 aa14.9□□□□□ -0.02
LIG1-204ENST00000542460 THAP5Q7Z6K1 395 aa14.9□□□□□ -0.02
LIG1-204ENST00000542460 LINC00346Q8IVM7 164 aa14.9□□□□□ -0.02
LIG1-204ENST00000542460 OR6N2Q8NGY6 317 aa14.9□□□□□ -0.02
LIG1-204ENST00000542460 APH1BQ8WW43 257 aa14.9□□□□□ -0.02
LIG1-204ENST00000542460 ESRP2Q9H6T0 727 aaKnown RBP14.9□□□□□ -0.02
LIG1-204ENST00000542460 ANKHD1Q8IWZ3 2542 aaKnown RBP14.9□□□□□ -0.02
LIG1-204ENST00000542460 IQCMA0A1B0GVH7 501 aa14.89□□□□□ -0.03
LIG1-204ENST00000542460 SGCEO43556 437 aa14.89□□□□□ -0.03
LIG1-204ENST00000542460 SELENOFO60613 162 aa14.89□□□□□ -0.03
LIG1-204ENST00000542460 ZNF14P17017 642 aaPredicted RBP14.89□□□□□ -0.03
LIG1-204ENST00000542460 NAA10P41227 235 aaPredicted RBP14.89□□□□□ -0.03
LIG1-204ENST00000542460 RPS27P42677 84 aaKnown RBP14.89□□□□□ -0.03
LIG1-204ENST00000542460 IDH3GP51553 393 aaPredicted RBP14.89□□□□□ -0.03
LIG1-204ENST00000542460 POU4F2Q12837 409 aa14.89□□□□□ -0.03
LIG1-204ENST00000542460 RAB39AQ14964 217 aa14.89□□□□□ -0.03
LIG1-204ENST00000542460 CORO6Q6QEF8 472 aa14.89□□□□□ -0.03
LIG1-204ENST00000542460 SLC16A9Q7RTY1 509 aa14.89□□□□□ -0.03
LIG1-204ENST00000542460 DPY19L4Q7Z388 723 aa14.89□□□□□ -0.03
LIG1-204ENST00000542460 CNN2Q99439 309 aaKnown RBP14.89□□□□□ -0.03
LIG1-204ENST00000542460 ANKRD60Q9BZ19 345 aa14.89□□□□□ -0.03
LIG1-204ENST00000542460 WNT5BQ9H1J7 359 aa14.89□□□□□ -0.03
LIG1-204ENST00000542460 C1orf198Q9H425 327 aa14.89□□□□□ -0.03
LIG1-204ENST00000542460 GDF2Q9UK05 429 aaPredicted RBP14.89□□□□□ -0.03
LIG1-204ENST00000542460 IGHV1-18A0A0C4DH31 117 aa14.88□□□□□ -0.03
LIG1-204ENST00000542460 DEFB108AA8MXU0 73 aa14.88□□□□□ -0.03
LIG1-204ENST00000542460 RER1O15258 196 aa14.88□□□□□ -0.03
LIG1-204ENST00000542460 WBP4O75554 376 aaKnown RBP14.88□□□□□ -0.03
LIG1-204ENST00000542460 GOSR1O95249 250 aa14.88□□□□□ -0.03
LIG1-204ENST00000542460 CD40P25942 277 aa14.88□□□□□ -0.03
LIG1-204ENST00000542460 MTNR1AP48039 350 aa14.88□□□□□ -0.03
LIG1-204ENST00000542460 NR1H2P55055 460 aa14.88□□□□□ -0.03
LIG1-204ENST00000542460 NCMAPQ5T1S8 102 aa14.88□□□□□ -0.03
LIG1-204ENST00000542460 ZNF774Q6NX45 483 aa14.88□□□□□ -0.03
LIG1-204ENST00000542460 ZNF584Q8IVC4 421 aa14.88□□□□□ -0.03
LIG1-204ENST00000542460 ZNF454Q8N9F8 522 aa14.88□□□□□ -0.03
LIG1-204ENST00000542460 CPEB3Q8NE35 698 aaKnown RBP14.88□□□□□ -0.03
LIG1-204ENST00000542460 IL17RDQ8NFM7 739 aa14.88□□□□□ -0.03
LIG1-204ENST00000542460 AKR7LQ8NHP1 331 aa14.88□□□□□ -0.03
LIG1-204ENST00000542460 OTOSQ8NHW6 89 aa14.88□□□□□ -0.03
LIG1-204ENST00000542460 CNIH3Q8TBE1 160 aa14.88□□□□□ -0.03
LIG1-204ENST00000542460 PLPPR2Q96GM1 343 aa14.88□□□□□ -0.03
LIG1-204ENST00000542460 YIPF3Q9GZM5 350 aa14.88□□□□□ -0.03
LIG1-204ENST00000542460 ADGRL4Q9HBW9 690 aa14.88□□□□□ -0.03
LIG1-204ENST00000542460 PLEK2Q9NYT0 353 aa14.88□□□□□ -0.03
LIG1-204ENST00000542460 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP14.87□□□□□ -0.03
LIG1-204ENST00000542460 DPRXA6NFQ7 191 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 CELA3BP08861 270 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 MRPL3P09001 348 aaKnown RBP14.87□□□□□ -0.03
LIG1-204ENST00000542460 SBK2P0C263 348 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 CECR9P0C854 216 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 PSKH1P11801 424 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 MYF6P23409 242 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 ATP6V1E1P36543 226 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 BSPH1Q075Z2 132 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 CDK5R2Q13319 367 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 RAB35Q15286 201 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 CCDC92Q53HC0 331 aaPredicted RBP14.87□□□□□ -0.03
LIG1-204ENST00000542460 ELFN2Q5R3F8 820 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 VASH1Q7L8A9 365 aaPredicted RBP14.87□□□□□ -0.03
LIG1-204ENST00000542460 DCXRQ7Z4W1 244 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 OR51G2Q8NGK0 314 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 FBLIM1Q8WUP2 373 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 MS4A3Q96HJ5 214 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 RPL36Q9Y3U8 105 aaKnown RBP14.87□□□□□ -0.03
LIG1-204ENST00000542460 A6NNC1 897 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 SIAH2O43255 324 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 DOK2O60496 412 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 CRYAAP02489 173 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 COX5BP10606 129 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 STOMP27105 288 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 APLNRP35414 380 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 NUDT6P53370 316 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 EIF2B1Q14232 305 aaKnown RBP14.87□□□□□ -0.03
LIG1-204ENST00000542460 SMN1Q16637 294 aaKnown RBP14.87□□□□□ -0.03
LIG1-204ENST00000542460 TMEM154Q6P9G4 183 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 CFAP77Q6ZQR2 320 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 MYPOPQ86VE0 399 aaPredicted RBP14.87□□□□□ -0.03
LIG1-204ENST00000542460 CDC20BQ86Y33 519 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 SLC30A7Q8NEW0 376 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 RNFT2Q96EX2 444 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 PIK3IP1Q96FE7 263 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 MAP6Q96JE9 813 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 MNTQ99583 582 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 HDHD2Q9H0R4 259 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 Q9H521 79 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms