RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	GALNS	P34059	522 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	CBFB	Q13951	182 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	OR10K2	Q6IF99	312 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	SLC25A25	Q6KCM7	469 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	TMEM205	Q6UW68	189 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	MAMDC2	Q7Z304	686 aa	Predicted RBP	13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	PDZD9	Q8IXQ8	264 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	APCDD1L	Q8NCL9	501 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	OR51A2	Q8NGJ7	313 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	OR52B4	Q8NGK2	314 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	OR1S1	Q8NH92	325 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	MRPS24	Q96EL2	167 aa	Known RBP	13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	CYYR1	Q96J86	154 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	CGGBP1	Q9UFW8	167 aa	Predicted RBP	13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	MRTO4	Q9UKD2	239 aa	Known RBP	13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	MOK	Q9UQ07	419 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286		D6RAR5	112 aa		13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	LINC01387	J3KSC0	135 aa		13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	PRAF2	O60831	178 aa		13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	PSMB1	P20618	241 aa	Known RBP	13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	GPR85	P60893	370 aa		13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	PSMA6	P60900	246 aa	Known RBP	13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	RPL27	P61353	136 aa	Known RBP	13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	DEFA5	Q01523	94 aa		13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	LINC00303	Q3SY05	128 aa		13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	FAM69A	Q5T7M9	428 aa		13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	PTCRA	Q6ISU1	281 aa	Predicted RBP	13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	DVL3	Q92997	716 aa	Predicted RBP	13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	C4orf45	Q96LM5	186 aa		13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	GPR179	Q6PRD1	2367 aa		13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	ARPC4-TTLL3	A0A0A6YYG9	625 aa		13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	ARPC5	O15511	151 aa		13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	SIX6	O95475	246 aa		13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	IFNGR1	P15260	489 aa		13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	KLK2	P20151	261 aa		13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	CALCR	P30988	508 aa		13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	HOXA1	P49639	335 aa	Predicted RBP	13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	ARHGDIB	P52566	201 aa		13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	TAS2R20	P59543	309 aa		13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	OC90	Q02509	493 aa	Predicted RBP	13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	EIF2B1	Q14232	305 aa	Known RBP	13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	B3GNTL1	Q67FW5	361 aa	Predicted RBP	13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	NDUFAF7	Q7L592	441 aa		13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	MEIOB	Q8N635	442 aa		13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	ZNF441	Q8N8Z8	693 aa		13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	ZNF275	Q9NSD4	429 aa	Predicted RBP	13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	ZNF69	Q9UC07	566 aa		13.25	□□□□□ -0.29
DDX55-209	ENST00000542286	TRBV5-5	A0A0J9YX44	114 aa		13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	PLPP3	O14495	311 aa		13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	GIP	P09681	153 aa	Predicted RBP	13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	APEH	P13798	732 aa	Known RBP	13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	DHPS	P49366	369 aa	Predicted RBP	13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	PDSS1	Q5T2R2	415 aa		13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	TMUB2	Q71RG4	321 aa		13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	LINC00469	Q8N7U9	141 aa		13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	OR8S1	Q8NH09	359 aa		13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	ZNF519	Q8TB69	540 aa		13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	S100A16	Q96FQ6	103 aa	Known RBP	13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	LRRC46	Q96FV0	321 aa		13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	ABHD6	Q9BV23	337 aa		13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	ARL6	Q9H0F7	186 aa		13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	PRDM6	Q9NQX0	595 aa		13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	PCDHGA5	Q9Y5G8	931 aa		13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	IGLV1-36	A0A0B4J1U3	117 aa		13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	TRBV11-1	A0A0K0K1C0	115 aa		13.24	□□□□□ -0.29
DDX55-209	ENST00000542286		A0A1B0GUH1	482 aa		13.24	□□□□□ -0.29
DDX55-209	ENST00000542286		A0A1W2PQM1	296 aa		13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	SMAD9	O15198	467 aa	Known RBP	13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	NPIPB7	O75200	414 aa		13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	KRT33A	O76009	404 aa		13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	GABRA1	P14867	456 aa		13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	SLC6A8	P48029	635 aa		13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	POLR2H	P52434	150 aa	Known RBP	13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	RAP2B	P61225	183 aa		13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	SEC61A1	P61619	476 aa	Known RBP	13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	POU3F1	Q03052	451 aa	Predicted RBP	13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	SGCB	Q16585	318 aa		13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	KRT77	Q7Z794	578 aa		13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	LURAP1L	Q8IV03	231 aa		13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	SPIC	Q8N5J4	248 aa		13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	EIF4E3	Q8N5X7	224 aa	Known RBP	13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	RAB33B	Q9H082	229 aa		13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	EMC9	Q9Y3B6	208 aa		13.24	□□□□□ -0.29
DDX55-209	ENST00000542286	DCDC2B	A2VCK2	349 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	SIGLEC6	O43699	453 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	CELA2A	P08217	269 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	ART1	P52961	327 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	FOXF1	Q12946	379 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	SLC17A1	Q14916	467 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	PABPC1L2A	Q5JQF8	200 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	NHLRC1	Q6VVB1	395 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286		Q7L0L9	218 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	OR5T2	Q8NGG2	359 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	MVB12A	Q96EY5	273 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	MRPL48	Q96GC5	212 aa	Known RBP	13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	OR8B4	Q96RC9	309 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	TMPRSS13	Q9BYE2	586 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	COMMD4	Q9H0A8	199 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	FANCF	Q9NPI8	374 aa		13.23	□□□□□ -0.29
DDX55-209	ENST00000542286	TMEM200C	A6NKL6	621 aa		13.23	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms