RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 IFNA21P01568 189 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 ADPRHP54922 357 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 RIPPLY1Q0D2K3 151 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 NFATC4Q14934 902 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 UBXN2BQ14CS0 331 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 NSDHLQ15738 373 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 ACKR1Q16570 336 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 GUCA2BQ16661 112 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 CHRFAM7AQ494W8 412 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 C1QL3Q5VWW1 255 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 DCXRQ7Z4W1 244 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 ABHD12BQ7Z5M8 362 aaPredicted RBP11.73□□□□□ -0.53
MSH6-210ENST00000540021 ZNF283Q8N7M2 679 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 OR51A2Q8NGJ7 313 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 SULT4A1Q9BR01 284 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 A0A087WV62 115 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 LOC107986453A0A1B0GWG9 222 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 SDCBPO00560 298 aaPredicted RBP11.73□□□□□ -0.53
MSH6-210ENST00000540021 TSPAN15O95858 294 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 PGCP20142 388 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 RPS11P62280 158 aaKnown RBP eCLIP11.73□□□□□ -0.53
MSH6-210ENST00000540021 POU3F1Q03052 451 aaPredicted RBP11.73□□□□□ -0.53
MSH6-210ENST00000540021 OVCH2Q7RTZ1 564 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 ZNF679Q8IYX0 411 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 TOE1Q96GM8 510 aaKnown RBP11.73□□□□□ -0.53
MSH6-210ENST00000540021 RHBDD3Q9Y3P4 386 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 ZNF98A6NK75 572 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 ADAM11O75078 769 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 HNRNPA2B1P22626 353 aaKnown RBP11.73□□□□□ -0.53
MSH6-210ENST00000540021 ADH6P28332 368 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 ALG11Q2TAA5 492 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 ABCA11PQ4W5N1 156 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 OR6K3Q8NGY3 331 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 SLC37A2Q8TED4 501 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 FGF11Q92914 225 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 EMC6Q9BV81 110 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 SHARPINQ9H0F6 387 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 SLC22A11Q9NSA0 550 aa11.73□□□□□ -0.53
MSH6-210ENST00000540021 PLXNA4Q9HCM2 1894 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 SLC17A2O00624 439 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 NKX2-2O95096 273 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 PSMB6P28072 239 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 ACAA2P42765 397 aaKnown RBP11.72□□□□□ -0.53
MSH6-210ENST00000540021 ETFBKMTQ8IXQ9 262 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 KCNRGQ8N5I3 272 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 POLMQ9NP87 494 aaPredicted RBP11.72□□□□□ -0.53
MSH6-210ENST00000540021 PRMT8Q9NR22 394 aaPredicted RBP11.72□□□□□ -0.53
MSH6-210ENST00000540021 BRWD1Q9NSI6 2320 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 MED12Q93074 2177 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 LILRB3O75022 631 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 MPZL1O95297 269 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 IGKV1D-16P01601 117 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 FCRL6Q6DN72 434 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 TMEM225Q6GV28 225 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 MFSD8Q8NHS3 518 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 RNASE11Q8TAA1 199 aaKnown RBP11.72□□□□□ -0.53
MSH6-210ENST00000540021 TCEAL3Q969E4 200 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 VOPP1Q96AW1 172 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 C4orf45Q96LM5 186 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 CDC6Q99741 560 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 SLC17A4Q9Y2C5 497 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 RPH3AQ9Y2J0 694 aaPredicted RBP11.72□□□□□ -0.53
MSH6-210ENST00000540021 TMED7Q9Y3B3 224 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 RPA2P15927 270 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 KCNJ3P48549 501 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 SLC17A1Q14916 467 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 ZNF74Q16587 644 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 ATPAF1Q5TC12 328 aaPredicted RBP11.72□□□□□ -0.53
MSH6-210ENST00000540021 ADAM5Q6NVV9 412 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 ANGPTL5Q86XS5 388 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 BAP18Q8IXM2 172 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 PNLDC1Q8NA58 520 aaKnown RBP11.72□□□□□ -0.53
MSH6-210ENST00000540021 GPR119Q8TDV5 335 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 RGP1Q92546 391 aaPredicted RBP11.72□□□□□ -0.53
MSH6-210ENST00000540021 AMELYQ99218 206 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 TBX21Q9UL17 535 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 CYP8B1Q9UNU6 501 aa11.72□□□□□ -0.53
MSH6-210ENST00000540021 PRSS44E7EML9 344 aa11.71□□□□□ -0.53
MSH6-210ENST00000540021 SIGLEC6O43699 453 aa11.71□□□□□ -0.53
MSH6-210ENST00000540021 CPT2P23786 658 aa11.71□□□□□ -0.53
MSH6-210ENST00000540021 CYCSP99999 105 aaKnown RBP11.71□□□□□ -0.53
MSH6-210ENST00000540021 CHRDL2Q6WN34 429 aa11.71□□□□□ -0.53
MSH6-210ENST00000540021 ZNF704Q6ZNC4 412 aaPredicted RBP11.71□□□□□ -0.53
MSH6-210ENST00000540021 CMTM3Q96MX0 182 aa11.71□□□□□ -0.53
MSH6-210ENST00000540021 MAP3K3Q99759 626 aa11.71□□□□□ -0.53
MSH6-210ENST00000540021 HELZP42694 1942 aaKnown RBP11.71□□□□□ -0.53
MSH6-210ENST00000540021 TCRBV21S2A2A0A5A6 115 aa11.71□□□□□ -0.53
MSH6-210ENST00000540021 OR4C45A6NMZ5 311 aa11.71□□□□□ -0.53
MSH6-210ENST00000540021 J3QRE1 110 aa11.71□□□□□ -0.53
MSH6-210ENST00000540021 ARPC3O15145 178 aa11.71□□□□□ -0.53
MSH6-210ENST00000540021 SSX5O60225 188 aa11.71□□□□□ -0.53
MSH6-210ENST00000540021 ZNF254O75437 659 aa11.71□□□□□ -0.53
MSH6-210ENST00000540021 APOC1P02654 83 aa11.71□□□□□ -0.53
MSH6-210ENST00000540021 CA3P07451 260 aa11.71□□□□□ -0.53
MSH6-210ENST00000540021 NAGAP17050 411 aa11.71□□□□□ -0.53
MSH6-210ENST00000540021 CASRP41180 1078 aa11.71□□□□□ -0.53
MSH6-210ENST00000540021 FXYD4P59646 89 aa11.71□□□□□ -0.53
MSH6-210ENST00000540021 SLC16A13Q7RTY0 426 aa11.71□□□□□ -0.53
MSH6-210ENST00000540021 OR52H1Q8NGJ2 320 aa11.71□□□□□ -0.53
MSH6-210ENST00000540021 LMX1AQ8TE12 382 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms