RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 CREBBPQ92793 2442 aa10.59□□□□□ -0.71
CLIP1-208ENST00000537004 TRBV2A0A0J9YWF9 115 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 MS4A18H0YCH9 400 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 PSMD9O00233 223 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 ZIC3O60481 467 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 WDR1O75083 606 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 AKR7A3O95154 331 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 HLA-DOBP13765 273 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 CFL1P23528 166 aaKnown RBP10.58□□□□□ -0.72
CLIP1-208ENST00000537004 EDNRAP25101 427 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 SHC1P29353 583 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 EIF2B2P49770 351 aaKnown RBP10.58□□□□□ -0.72
CLIP1-208ENST00000537004 SRYQ05066 204 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 MS4A18Q3C1V0 323 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 GLYR1Q49A26 553 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-208ENST00000537004 ACSM3Q53FZ2 586 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 C1orf185Q5T7R7 199 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 TMEM211Q6ICI0 200 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 H1FNTQ75WM6 255 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-208ENST00000537004 NR2C2APQ86WQ0 139 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 KDM8Q8N371 416 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 OR5M1Q8NGP8 315 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 POC1BQ8TC44 478 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 WDYHV1Q96HA8 205 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 ADAD1Q96M93 576 aaKnown RBP10.58□□□□□ -0.72
CLIP1-208ENST00000537004 ATF6BQ99941 703 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 CCDC32Q9BV29 185 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 POTEKPQ9BYX7 375 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 WDR76Q9H967 626 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 VSX1Q9NZR4 365 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-208ENST00000537004 TRAPPC4Q9Y296 219 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 FKBP7Q9Y680 259 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 LIPT2A6NK58 231 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 GPANK1O95872 356 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 SERPINA3P01011 423 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 CD1AP06126 327 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 MYL9P24844 172 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 DPP4P27487 766 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 CHRNB4P30926 498 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 GFRA1P56159 465 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 ZP4Q12836 540 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 MELKQ14680 651 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 ZNF79Q15937 498 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 ACSF3Q4G176 576 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-208ENST00000537004 KCTD20Q7Z5Y7 419 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 FADS6Q8N9I5 356 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 NAXEQ8NCW5 288 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 OR4K17Q8NGC6 315 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 OR6N2Q8NGY6 317 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 DIRAS2Q96HU8 199 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 KLHL15Q96M94 604 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 INTS14Q96SY0 518 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 PDCD1LG2Q9BQ51 273 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 OR2B2Q9GZK3 357 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 PTGES2Q9H7Z7 377 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 CHST11Q9NPF2 352 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 COMMD3Q9UBI1 195 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 LAMP5Q9UJQ1 280 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 DKKL1Q9UK85 242 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 B9D1Q9UPM9 204 aa10.58□□□□□ -0.72
CLIP1-208ENST00000537004 SLC22A23A1A5C7 686 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 FAM47E-STBD1D6RA91 191 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 SLC16A7O60669 478 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 TACSTD2P09758 323 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 OR8G3PP0DMU2 310 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 SRD5A2P31213 254 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 AGFG1P52594 562 aaKnown RBP10.57□□□□□ -0.72
CLIP1-208ENST00000537004 PPP3R1P63098 170 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 MYBPHQ13203 477 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 ZMAT1Q5H9K5 638 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 C3orf33Q6P1S2 294 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 DPY19L4Q7Z388 723 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 FAM220AQ7Z4H9 259 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 TPRA1Q86W33 373 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 LILRB4Q8NHJ6 448 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 MNTQ99583 582 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 PRDM14Q9GZV8 571 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 SERINC1Q9NRX5 453 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 C14orf119Q9NWQ9 140 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 MRM2Q9UI43 246 aaKnown RBP10.57□□□□□ -0.72
CLIP1-208ENST00000537004 INTS1Q8N201 2190 aaKnown RBP10.57□□□□□ -0.72
CLIP1-208ENST00000537004 CELSR1Q9NYQ6 3014 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 MAP1AP78559 2803 aaPredicted RBP10.57□□□□□ -0.72
CLIP1-208ENST00000537004 IGLV1-36A0A0B4J1U3 117 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 H0YC42 278 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 HLA-DQA2P01906 255 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 GABRA1P14867 456 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 CTLA4P16410 223 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 ALOX5APP20292 161 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 AZGP1P25311 298 aaKnown RBP10.57□□□□□ -0.72
CLIP1-208ENST00000537004 RPS27P42677 84 aaKnown RBP10.57□□□□□ -0.72
CLIP1-208ENST00000537004 CENPAP49450 140 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 NANOS3P60323 173 aaKnown RBP10.57□□□□□ -0.72
CLIP1-208ENST00000537004 RPS11P62280 158 aaKnown RBP eCLIP10.57□□□□□ -0.72
CLIP1-208ENST00000537004 POU3F1Q03052 451 aaPredicted RBP10.57□□□□□ -0.72
CLIP1-208ENST00000537004 TFF3Q07654 80 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 HBMQ6B0K9 141 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 THOC7Q6I9Y2 204 aaKnown RBP10.57□□□□□ -0.72
CLIP1-208ENST00000537004 MZT2AQ6P582 158 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 FAM131AQ6UXB0 335 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms