RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 WDR88Q6ZMY6 472 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 ZNF813Q6ZN06 617 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 DNM1P46Q6ZS02 220 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 TMPRSS11FQ6ZWK6 438 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 LDLRAD3Q86YD5 345 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 DCUN1D3Q8IWE4 304 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 SLC35F2Q8IXU6 374 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 PUSL1Q8N0Z8 303 aaKnown RBP5.93□□□□□ -1.46
USP28-202ENST00000535607 MUC20Q8N307 709 aaPredicted RBP5.93□□□□□ -1.46
USP28-202ENST00000535607 COMMD1Q8N668 190 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 ZNF433Q8N7K0 673 aaPredicted RBP5.93□□□□□ -1.46
USP28-202ENST00000535607 TMEM229BQ8NBD8 167 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 BBS1Q8NFJ9 593 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 WFIKKN2Q8TEU8 576 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 TMEM239Q8WW34 195 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 RSPRY1Q96DX4 576 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 ALG14Q96F25 216 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 ZNF503Q96F45 646 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 FAHD2AQ96GK7 314 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 OR7D2Q96RA2 312 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 MYADMQ96S97 322 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 PHB2Q99623 299 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 PRRT1Q99946 306 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 ZNF559Q9BR84 538 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 ZNF426Q9BUY5 554 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 PHF7Q9BWX1 381 aaPredicted RBP5.93□□□□□ -1.46
USP28-202ENST00000535607 SORBS1Q9BX66 1292 aaKnown RBP5.93□□□□□ -1.46
USP28-202ENST00000535607 KRTAP3-1Q9BYR8 98 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 COMMD4Q9H0A8 199 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 TMPRSS5Q9H3S3 457 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 TUBA4BQ9H853 241 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 TMEM27Q9HBJ8 222 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 ADGRL4Q9HBW9 690 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 VSX1Q9NZR4 365 aaPredicted RBP5.93□□□□□ -1.46
USP28-202ENST00000535607 MRPL15Q9P015 296 aaKnown RBP5.93□□□□□ -1.46
USP28-202ENST00000535607 GNG8Q9UK08 70 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 SLC7A7Q9UM01 511 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 HS3ST2Q9Y278 367 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 ZNF443Q9Y2A4 671 aaPredicted RBP5.93□□□□□ -1.46
USP28-202ENST00000535607 PCDHGA5Q9Y5G8 931 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 DMRT1Q9Y5R6 373 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 KPTNQ9Y664 436 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 SIRT4Q9Y6E7 314 aaPredicted RBP5.93□□□□□ -1.46
USP28-202ENST00000535607 COL4A2P08572 1712 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 C5orf42Q9H799 3197 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 PLXNA2O75051 1894 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 SPTBN5Q9NRC6 3674 aaKnown RBP5.92□□□□□ -1.46
USP28-202ENST00000535607 RNF222A6NCQ9 220 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 ANTXRLA6NF34 631 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 TVP23AA6NH52 213 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 FAM183AA6NL82 134 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 ZNF729A6NN14 1252 aaPredicted RBP5.92□□□□□ -1.46
USP28-202ENST00000535607 WASH3PC4AMC7 463 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 K7ERQ8 282 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 TAAR5O14804 337 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 SCAMP1O15126 338 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 SCGNO76038 276 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 ZFPL1O95159 310 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 HMGN2P05204 90 aaKnown RBP5.92□□□□□ -1.46
USP28-202ENST00000535607 CD2P06729 351 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 OR4E1P0C645 316 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 HKR1P10072 659 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 PRF1P14222 555 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 CDK2P24941 298 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 NDUFS1P28331 727 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 S100A2P29034 98 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 BDKRB2P30411 391 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 DCTDP32321 178 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 EIF2S3P41091 472 aaKnown RBP5.92□□□□□ -1.46
USP28-202ENST00000535607 H2BFSP57053 126 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 STARD6P59095 220 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 TAS2R31P59538 309 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 REEP5Q00765 189 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 ZNF85Q03923 595 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 LTBQ06643 244 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 PJVKQ0ZLH3 352 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 TDGQ13569 410 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 LASP1Q14847 261 aaKnown RBP5.92□□□□□ -1.46
USP28-202ENST00000535607 ZNF750Q32MQ0 723 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 AMZ1Q400G9 498 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 Q499Y3 187 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 TMEM255AQ5JRV8 349 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 PLAC9Q5JTB6 97 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 DNLZQ5SXM8 178 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 FAM27D1Q5T7N8 215 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 C18orf63Q68DL7 685 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 PWWP2BQ6NUJ5 590 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 STEAP1BQ6NZ63 245 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 VITQ6UXI7 678 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 NHLRC1Q6VVB1 395 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 DBX2Q6ZNG2 339 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 HIST2H3AQ71DI3 136 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 TMPRSS9Q7Z410 1059 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 RASGEF1AQ8N9B8 481 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 RELL2Q8NC24 303 aaPredicted RBP5.92□□□□□ -1.46
USP28-202ENST00000535607 OR5M8Q8NGP6 311 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 OR1J2Q8NGS2 313 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 OR5J2Q8NH18 312 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 RXFP4Q8TDU9 374 aa5.92□□□□□ -1.46
USP28-202ENST00000535607 TMEM171Q8WVE6 324 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms