RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 SYT9Q86SS6 491 aa19.82■□□□□ 0.76
CPSF1-202ENST00000527827 OR2Z1Q8NG97 314 aa19.82■□□□□ 0.76
CPSF1-202ENST00000527827 NDRG4Q9ULP0 352 aaKnown RBP19.82■□□□□ 0.76
CPSF1-202ENST00000527827 ABHD16AO95870 558 aa19.81■□□□□ 0.76
CPSF1-202ENST00000527827 TNFRSF1AP19438 455 aa19.81■□□□□ 0.76
CPSF1-202ENST00000527827 GSTM3P21266 225 aa19.81■□□□□ 0.76
CPSF1-202ENST00000527827 KITLGP21583 273 aa19.81■□□□□ 0.76
CPSF1-202ENST00000527827 NPEPL1Q8NDH3 523 aa19.81■□□□□ 0.76
CPSF1-202ENST00000527827 ITLN1Q8WWA0 313 aa19.81■□□□□ 0.76
CPSF1-202ENST00000527827 TAF15Q92804 592 aaKnown RBP eCLIP19.81■□□□□ 0.76
CPSF1-202ENST00000527827 BPIFA2Q96DR5 249 aa19.81■□□□□ 0.76
CPSF1-202ENST00000527827 MRI1Q9BV20 369 aa19.81■□□□□ 0.76
CPSF1-202ENST00000527827 POLE4Q9NR33 117 aa19.81■□□□□ 0.76
CPSF1-202ENST00000527827 MAN2C1Q9NTJ4 1040 aa19.81■□□□□ 0.76
CPSF1-202ENST00000527827 TBCCD1Q9NVR7 557 aa19.81■□□□□ 0.76
CPSF1-202ENST00000527827 C12orf71A8MTZ7 269 aa19.8■□□□□ 0.76
CPSF1-202ENST00000527827 COX5BP10606 129 aa19.8■□□□□ 0.76
CPSF1-202ENST00000527827 IFI30P13284 250 aa19.8■□□□□ 0.76
CPSF1-202ENST00000527827 FUT4P22083 530 aa19.8■□□□□ 0.76
CPSF1-202ENST00000527827 TNFSF4P23510 183 aa19.8■□□□□ 0.76
CPSF1-202ENST00000527827 GUCA1AP43080 201 aaPredicted RBP19.8■□□□□ 0.76
CPSF1-202ENST00000527827 PAX8Q06710 450 aa19.8■□□□□ 0.76
CPSF1-202ENST00000527827 FHL1Q13642 323 aa19.8■□□□□ 0.76
CPSF1-202ENST00000527827 CYLC2Q14093 348 aaPredicted RBP19.8■□□□□ 0.76
CPSF1-202ENST00000527827 FAM205BPQ63HN1 556 aa19.8■□□□□ 0.76
CPSF1-202ENST00000527827 TREML4Q6UXN2 200 aa19.8■□□□□ 0.76
CPSF1-202ENST00000527827 DYDC1Q8WWB3 177 aa19.8■□□□□ 0.76
CPSF1-202ENST00000527827 CMBLQ96DG6 245 aa19.8■□□□□ 0.76
CPSF1-202ENST00000527827 EMC7Q9NPA0 242 aa19.8■□□□□ 0.76
CPSF1-202ENST00000527827 IL19Q9UHD0 177 aa19.8■□□□□ 0.76
CPSF1-202ENST00000527827 SOX21Q9Y651 276 aaPredicted RBP19.8■□□□□ 0.76
CPSF1-202ENST00000527827 DOCK11Q5JSL3 2073 aa19.8■□□□□ 0.76
CPSF1-202ENST00000527827 CLDN34H7C241 214 aa19.79■□□□□ 0.76
CPSF1-202ENST00000527827 FXYD1O00168 92 aa19.79■□□□□ 0.76
CPSF1-202ENST00000527827 TUBG1P23258 451 aa19.79■□□□□ 0.76
CPSF1-202ENST00000527827 CD80P33681 288 aa19.79■□□□□ 0.76
CPSF1-202ENST00000527827 PAX2Q02962 417 aa19.79■□□□□ 0.76
CPSF1-202ENST00000527827 SLC9A3R2Q15599 337 aa19.79■□□□□ 0.76
CPSF1-202ENST00000527827 PDLIM3Q53GG5 364 aaPredicted RBP19.79■□□□□ 0.76
CPSF1-202ENST00000527827 SLC25A28Q96A46 364 aa19.79■□□□□ 0.76
CPSF1-202ENST00000527827 ATP6V1G3Q96LB4 118 aa19.79■□□□□ 0.76
CPSF1-202ENST00000527827 ECSITQ9BQ95 431 aa19.79■□□□□ 0.76
CPSF1-202ENST00000527827 TUBG2Q9NRH3 451 aa19.79■□□□□ 0.76
CPSF1-202ENST00000527827 A4GNTQ9UNA3 340 aa19.79■□□□□ 0.76
CPSF1-202ENST00000527827 PPP1R3CQ9UQK1 317 aa19.79■□□□□ 0.76
CPSF1-202ENST00000527827 STARD10Q9Y365 291 aa19.79■□□□□ 0.76
CPSF1-202ENST00000527827 TRAV27A0A087WT01 109 aa19.78■□□□□ 0.76
CPSF1-202ENST00000527827 HTR3EA5X5Y0 456 aa19.78■□□□□ 0.76
CPSF1-202ENST00000527827 A6NIZ1 184 aa19.78■□□□□ 0.76
CPSF1-202ENST00000527827 POM121CA8CG34 1229 aa19.78■□□□□ 0.76
CPSF1-202ENST00000527827 H7C1C5 153 aa19.78■□□□□ 0.76
CPSF1-202ENST00000527827 IGHV4-38-2P0DP08 117 aa19.78■□□□□ 0.76
CPSF1-202ENST00000527827 MDH2P40926 338 aaKnown RBP19.78■□□□□ 0.76
CPSF1-202ENST00000527827 ERFP50548 548 aa19.78■□□□□ 0.76
CPSF1-202ENST00000527827 RAP1BP61224 184 aa19.78■□□□□ 0.76
CPSF1-202ENST00000527827 LCN6P62502 163 aa19.78■□□□□ 0.76
CPSF1-202ENST00000527827 RAP1AP62834 184 aa19.78■□□□□ 0.76
CPSF1-202ENST00000527827 IL13RA1P78552 427 aa19.78■□□□□ 0.76
CPSF1-202ENST00000527827 ST3GAL3Q11203 375 aa19.78■□□□□ 0.76
CPSF1-202ENST00000527827 ESCO2Q56NI9 601 aa19.78■□□□□ 0.76
CPSF1-202ENST00000527827 TTMPQ5BVD1 217 aa19.78■□□□□ 0.76
CPSF1-202ENST00000527827 MICU2Q8IYU8 434 aa19.78■□□□□ 0.76
CPSF1-202ENST00000527827 OR8J3Q8NGG0 315 aa19.78■□□□□ 0.76
CPSF1-202ENST00000527827 OR51A7Q8NH64 312 aa19.78■□□□□ 0.76
CPSF1-202ENST00000527827 HAVCR1Q96D42 359 aa19.78■□□□□ 0.76
CPSF1-202ENST00000527827 ZNF583Q96ND8 569 aa19.78■□□□□ 0.76
CPSF1-202ENST00000527827 WACQ9BTA9 647 aa19.78■□□□□ 0.76
CPSF1-202ENST00000527827 MS4A7Q9GZW8 240 aaPredicted RBP19.78■□□□□ 0.76
CPSF1-202ENST00000527827 OR5V1Q9UGF6 321 aa19.78■□□□□ 0.76
CPSF1-202ENST00000527827 CEACAM18A8MTB9 384 aa19.77■□□□□ 0.76
CPSF1-202ENST00000527827 TMEM178BH3BS89 294 aa19.77■□□□□ 0.76
CPSF1-202ENST00000527827 DOK2O60496 412 aa19.77■□□□□ 0.76
CPSF1-202ENST00000527827 WNT2P09544 360 aa19.77■□□□□ 0.76
CPSF1-202ENST00000527827 HTR5AP47898 357 aa19.77■□□□□ 0.76
CPSF1-202ENST00000527827 DEFA6Q01524 100 aa19.77■□□□□ 0.76
CPSF1-202ENST00000527827 CYBRD1Q53TN4 286 aa19.77■□□□□ 0.76
CPSF1-202ENST00000527827 LEG1Q6P5S2 330 aa19.77■□□□□ 0.76
CPSF1-202ENST00000527827 C9orf139Q6ZV77 190 aa19.77■□□□□ 0.76
CPSF1-202ENST00000527827 OR52E2Q8NGJ4 325 aa19.77■□□□□ 0.76
CPSF1-202ENST00000527827 PRRC1Q96M27 445 aa19.77■□□□□ 0.76
CPSF1-202ENST00000527827 OR2V2Q96R30 315 aa19.77■□□□□ 0.76
CPSF1-202ENST00000527827 SH3GL1Q99961 368 aa19.77■□□□□ 0.76
CPSF1-202ENST00000527827 GCM1Q9NP62 436 aa19.77■□□□□ 0.76
CPSF1-202ENST00000527827 LRCH1Q9Y2L9 728 aa19.77■□□□□ 0.76
CPSF1-202ENST00000527827 IGHV3OR16-10A0A075B7F0 116 aa19.76■□□□□ 0.75
CPSF1-202ENST00000527827 SGCEO43556 437 aa19.76■□□□□ 0.75
CPSF1-202ENST00000527827 MMP16P51512 607 aa19.76■□□□□ 0.75
CPSF1-202ENST00000527827 SCRN3Q0VDG4 424 aa19.76■□□□□ 0.75
CPSF1-202ENST00000527827 ERICH5Q6P6B1 374 aa19.76■□□□□ 0.75
CPSF1-202ENST00000527827 VASH1Q7L8A9 365 aaPredicted RBP19.76■□□□□ 0.75
CPSF1-202ENST00000527827 JAZF1Q86VZ6 243 aa19.76■□□□□ 0.75
CPSF1-202ENST00000527827 NRMQ8IXM6 262 aa19.76■□□□□ 0.75
CPSF1-202ENST00000527827 MUC20Q8N307 709 aaPredicted RBP19.76■□□□□ 0.75
CPSF1-202ENST00000527827 PARP8Q8N3A8 854 aa19.76■□□□□ 0.75
CPSF1-202ENST00000527827 C10orf82Q8WW14 230 aa19.76■□□□□ 0.75
CPSF1-202ENST00000527827 SURF4O15260 269 aa19.75■□□□□ 0.75
CPSF1-202ENST00000527827 IFNA14P01570 189 aa19.75■□□□□ 0.75
CPSF1-202ENST00000527827 PPIAL4GP0DN37 164 aa19.75■□□□□ 0.75
CPSF1-202ENST00000527827 KDELR2P33947 212 aa19.75■□□□□ 0.75
CPSF1-202ENST00000527827 LRRC23Q53EV4 343 aaPredicted RBP19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms