RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, human

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCOF1-215	ENST00000515516	RSRC1	Q96IZ7	334 aa	Known RBP	11.65	□□□□□ -0.54
TCOF1-215	ENST00000515516	DIRC2	Q96SL1	478 aa		11.65	□□□□□ -0.54
TCOF1-215	ENST00000515516	RACGAP1	Q9H0H5	632 aa		11.65	□□□□□ -0.54
TCOF1-215	ENST00000515516	GORASP2	Q9H8Y8	452 aa		11.65	□□□□□ -0.54
TCOF1-215	ENST00000515516	LPAR2	Q9HBW0	351 aa		11.65	□□□□□ -0.54
TCOF1-215	ENST00000515516	TUBG2	Q9NRH3	451 aa		11.65	□□□□□ -0.54
TCOF1-215	ENST00000515516	HIF1AN	Q9NWT6	349 aa		11.65	□□□□□ -0.54
TCOF1-215	ENST00000515516	MAGEL2	Q9UJ55	1249 aa		11.65	□□□□□ -0.54
TCOF1-215	ENST00000515516	ZDHHC8	Q9ULC8	765 aa		11.65	□□□□□ -0.54
TCOF1-215	ENST00000515516	SIGLEC7	Q9Y286	467 aa		11.65	□□□□□ -0.54
TCOF1-215	ENST00000515516	ATR	Q13535	2644 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	SOCS2	O14508	198 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	GADD45G	O95257	159 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	IGHV1-46	P01743	117 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	IFNGR2	P38484	337 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	OMP	P47874	163 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	CENPA	P49450	140 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	SCGB2A2	Q13296	93 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	AQP6	Q13520	282 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	SAMD4B	Q5PRF9	694 aa	Known RBP	11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	AVPI1	Q5T686	147 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	ACSM5	Q6NUN0	579 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	SHQ1	Q6PI26	577 aa	Known RBP	11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	DNM1P34	Q6PK57	102 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	RFPL4B	Q6ZWI9	263 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	FAM122B	Q7Z309	247 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	TSEN54	Q7Z6J9	526 aa	Known RBP	11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	PEG10	Q86TG7	708 aa	Known RBP	11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	ADCK1	Q86TW2	530 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	GLB1L2	Q8IW92	636 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	NPEPL1	Q8NDH3	523 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	CCL17	Q92583	94 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	GTF3A	Q92664	365 aa	Known RBP	11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	RASD2	Q96D21	266 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	C7orf34	Q96L11	122 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	COG8	Q96MW5	612 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	SYT4	Q9H2B2	425 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	NRIP3	Q9NQ35	241 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	TBCCD1	Q9NVR7	557 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	PLEK2	Q9NYT0	353 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	IL20RA	Q9UHF4	553 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	METRN	Q9UJH8	293 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	POLR1D	Q9Y2S0	133 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	IER3IP1	Q9Y5U9	82 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516		V9GYQ6	96 aa		11.64	□□□□□ -0.55
TCOF1-215	ENST00000515516	TRAV20	A0A0B4J274	112 aa		11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	TRBV4-1	A0A0J9YWV2	114 aa		11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	FAM157A	C9JC47	383 aa		11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	WNT9B	O14905	357 aa		11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	TCF21	O43680	179 aa		11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	ICMT	O60725	284 aa		11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	DIRAS1	O95057	198 aa		11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	NGF	P01138	241 aa		11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	SCG5	P05408	212 aa		11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	CTLA4	P16410	223 aa		11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	ZNF26	P17031	533 aa	Predicted RBP	11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	TNFSF4	P23510	183 aa		11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	CRABP1	P29762	137 aa		11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	LIMS1	P48059	325 aa		11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	MMP15	P51511	669 aa		11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	LSM6	P62312	80 aa	Known RBP	11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	MXRA7	P84157	204 aa		11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	SPIB	Q01892	262 aa		11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	MTX3	Q5HYI7	312 aa		11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	FAHD2B	Q6P2I3	314 aa	Predicted RBP	11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	SMARCD3	Q6STE5	483 aa		11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	RFLNB	Q8N5W9	214 aa		11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	TEX29	Q8N6K0	151 aa		11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	FAHD2A	Q96GK7	314 aa		11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	NSMCE2	Q96MF7	247 aa		11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	LRRC37B	Q96QE4	947 aa		11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	GPX7	Q96SL4	187 aa	Predicted RBP	11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	ZNF665	Q9H7R5	613 aa		11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	NDE1	Q9NXR1	346 aa		11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	VSX1	Q9NZR4	365 aa	Predicted RBP	11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	TAGLN3	Q9UI15	199 aa		11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	TMCC3	Q9ULS5	477 aa		11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	COA3	Q9Y2R0	106 aa	Predicted RBP	11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	DNHD1	Q96M86	4753 aa		11.63	□□□□□ -0.55
TCOF1-215	ENST00000515516	FBN1	P35555	2871 aa	Known RBP	11.62	□□□□□ -0.55
TCOF1-215	ENST00000515516	RTTN	Q86VV8	2226 aa		11.62	□□□□□ -0.55
TCOF1-215	ENST00000515516	OR10H3	O60404	316 aa		11.62	□□□□□ -0.55
TCOF1-215	ENST00000515516	DCTN3	O75935	186 aa		11.62	□□□□□ -0.55
TCOF1-215	ENST00000515516	FABP3	P05413	133 aa		11.62	□□□□□ -0.55
TCOF1-215	ENST00000515516	HSD17B1	P14061	328 aa		11.62	□□□□□ -0.55
TCOF1-215	ENST00000515516	SLC6A6	P31641	620 aa		11.62	□□□□□ -0.55
TCOF1-215	ENST00000515516	LMO4	P61968	165 aa		11.62	□□□□□ -0.55
TCOF1-215	ENST00000515516	GNGT1	P63211	74 aa		11.62	□□□□□ -0.55
TCOF1-215	ENST00000515516	TNFAIP6	P98066	277 aa	Predicted RBP	11.62	□□□□□ -0.55
TCOF1-215	ENST00000515516	SEC23B	Q15437	767 aa		11.62	□□□□□ -0.55
TCOF1-215	ENST00000515516	KRTAP24-1	Q3LI83	254 aa		11.62	□□□□□ -0.55
TCOF1-215	ENST00000515516	C1orf94	Q6P1W5	598 aa		11.62	□□□□□ -0.55
TCOF1-215	ENST00000515516	PGM2L1	Q6PCE3	622 aa		11.62	□□□□□ -0.55
TCOF1-215	ENST00000515516	C16orf89	Q6UX73	402 aa		11.62	□□□□□ -0.55
TCOF1-215	ENST00000515516	VASH1	Q7L8A9	365 aa	Predicted RBP	11.62	□□□□□ -0.55
TCOF1-215	ENST00000515516	JAZF1	Q86VZ6	243 aa		11.62	□□□□□ -0.55
TCOF1-215	ENST00000515516	PGAM4	Q8N0Y7	254 aa		11.62	□□□□□ -0.55
TCOF1-215	ENST00000515516	FAM86B1	Q8N7N1	296 aa		11.62	□□□□□ -0.55
TCOF1-215	ENST00000515516	FANK1	Q8TC84	345 aa		11.62	□□□□□ -0.55
TCOF1-215	ENST00000515516	DHRS1	Q96LJ7	313 aa		11.62	□□□□□ -0.55

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