RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 POLR2JP52435 117 aaKnown RBP11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 UGT2B15P54855 530 aa11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 ERVK-25P63136 954 aa11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 ZNF181Q2M3W8 571 aa11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 ZNF404Q494X3 552 aa11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 RUSC1-AS1Q66K80 236 aa11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 TTC33Q6PID6 262 aaPredicted RBP11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 GOLGA6L1Q8N7Z2 621 aa11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 MPP4Q96JB8 637 aa11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 MCHR1Q99705 422 aa11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 TMEM246Q9BRR3 403 aa11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 WDR55Q9H6Y2 383 aaPredicted RBP11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 CLN8Q9UBY8 286 aa11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 NDRG4Q9ULP0 352 aaKnown RBP11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 TIMM10BQ9Y5J6 103 aa11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 GMEB1Q9Y692 573 aa11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 HDAC3O15379 428 aa11.84□□□□□ -0.51
PRPF40A-211ENST00000493468 ABHD16AO95870 558 aa11.84□□□□□ -0.51
PRPF40A-211ENST00000493468 COX5BP10606 129 aa11.84□□□□□ -0.51
PRPF40A-211ENST00000493468 CFHR2P36980 270 aa11.84□□□□□ -0.51
PRPF40A-211ENST00000493468 PCBD1P61457 104 aa11.84□□□□□ -0.51
PRPF40A-211ENST00000493468 RPL18Q07020 188 aaKnown RBP11.84□□□□□ -0.51
PRPF40A-211ENST00000493468 STX3Q13277 289 aa11.84□□□□□ -0.51
PRPF40A-211ENST00000493468 SGCAQ16586 387 aa11.84□□□□□ -0.51
PRPF40A-211ENST00000493468 ARMC4Q5T2S8 1044 aa11.84□□□□□ -0.51
PRPF40A-211ENST00000493468 GDPGP1Q6ZNW5 385 aa11.84□□□□□ -0.51
PRPF40A-211ENST00000493468 Q6ZSV7 163 aa11.84□□□□□ -0.51
PRPF40A-211ENST00000493468 ARMC8Q8IUR7 673 aa11.84□□□□□ -0.51
PRPF40A-211ENST00000493468 GATAD2BQ8WXI9 593 aa11.84□□□□□ -0.51
PRPF40A-211ENST00000493468 MAELQ96JY0 434 aaKnown RBP11.84□□□□□ -0.51
PRPF40A-211ENST00000493468 COG8Q96MW5 612 aa11.84□□□□□ -0.51
PRPF40A-211ENST00000493468 TMEM38AQ9H6F2 299 aa11.84□□□□□ -0.51
PRPF40A-211ENST00000493468 SSU72Q9NP77 194 aaKnown RBP11.84□□□□□ -0.51
PRPF40A-211ENST00000493468 ACOXLQ9NUZ1 547 aa11.84□□□□□ -0.51
PRPF40A-211ENST00000493468 IGKV1D-43A0A0B4J1Z2 117 aa11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 CENPVL3A0A0U1RRI6 287 aa11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 THY1P04216 161 aa11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 F13BP05160 661 aa11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 UMPSP11172 480 aa11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 MMP9P14780 707 aa11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 BGNP21810 368 aa11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 PPIBP23284 216 aaKnown RBP11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 IER3P46695 156 aa11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 IFFO1Q0D2I5 559 aa11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 BST1Q10588 318 aa11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 SCARB2Q14108 478 aa11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 FAM189A2Q15884 450 aa11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 ENTPD8Q5MY95 495 aa11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 LRIF1Q5T3J3 769 aa11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 WDR25Q64LD2 544 aaPredicted RBP11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 SLC25A47Q6Q0C1 308 aa11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 FOXL2NBQ6ZUU3 175 aa11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 SYT9Q86SS6 491 aa11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 C1orf87Q8N0U7 546 aa11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 C10orf111Q8N326 155 aa11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 LRTOMTQ8WZ04 291 aa11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 PPP1R14AQ96A00 147 aa11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 HAVCR1Q96D42 359 aa11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 WACQ9BTA9 647 aa11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 CDADC1Q9BWV3 514 aa11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 TRIM15Q9C019 465 aa11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 POFUT1Q9H488 388 aa11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 INIPQ9NRY2 104 aa11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 SLC25A37Q9NYZ2 338 aa11.83□□□□□ -0.52
PRPF40A-211ENST00000493468 LRRC30A6NM36 301 aa11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 CPSF4LA6NMK7 179 aaKnown RBP11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 ZNF879B4DU55 563 aa11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 C22orf46C9J442 243 aa11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 BLOC1S5-TXNDC5H3BN57 136 aa11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 M0R3H8 397 aa11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 KPNA4O00629 521 aaPredicted RBP11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 PIP5K1CO60331 668 aa11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 TSPAN9O75954 239 aa11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 CYB5R3P00387 301 aaPredicted RBP11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 IGHV4-59P01825 116 aa11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 LIPFP07098 398 aa11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 VIMP08670 466 aaKnown RBP11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 TSPAN19P0C672 248 aa11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 SLC6A2P23975 617 aa11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 LAP3P28838 519 aa11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 NPY4RP50391 375 aa11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 LOXL3P58215 753 aa11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 GUCY1A3Q02108 690 aa11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 FMODQ06828 376 aa11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 NPTX1Q15818 432 aa11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 SLC2A7Q6PXP3 512 aa11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 ZNF841Q6ZN19 808 aa11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 DCDC5Q6ZRR9 648 aa11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 MSRB3Q8IXL7 192 aa11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 OR9I1Q8NGQ6 314 aa11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 ZNF420Q8TAQ5 688 aaPredicted RBP11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 FNDC8Q8TC99 324 aa11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 MRAPQ8TCY5 172 aa11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 ADAMTS16Q8TE57 1224 aa11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 HDAC2Q92769 488 aaKnown RBP11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 CMBLQ96DG6 245 aa11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 MEGF10Q96KG7 1140 aa11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 TBX15Q96SF7 602 aa11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 PCGF1Q9BSM1 259 aa11.82□□□□□ -0.52
PRPF40A-211ENST00000493468 ALG12Q9BV10 488 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms