RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	IGHM	P01871	453 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	ZNF3	P17036	446 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	CRABP1	P29762	137 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	CAPZA2	P47755	286 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	CDC42	P60953	191 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	UBE2N	P61088	152 aa	Known RBP	7.6	□□□□□ -1.19
USP4-213	ENST00000488520	ROR2	Q01974	943 aa	Known RBP	7.6	□□□□□ -1.19
USP4-213	ENST00000488520	KHDRBS1	Q07666	443 aa	Known RBP eCLIP	7.6	□□□□□ -1.19
USP4-213	ENST00000488520	NPRL3	Q12980	569 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	RIPK1	Q13546	671 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	KRR1	Q13601	381 aa	Known RBP	7.6	□□□□□ -1.19
USP4-213	ENST00000488520	PTGES3	Q15185	160 aa	Known RBP	7.6	□□□□□ -1.19
USP4-213	ENST00000488520	SGCA	Q16586	387 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	ZIK1	Q3SY52	487 aa	Predicted RBP	7.6	□□□□□ -1.19
USP4-213	ENST00000488520	LEG1	Q6P5S2	330 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	KLHL24	Q6TFL4	600 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	TFAP2E	Q6VUC0	442 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	BHLHA15	Q7RTS1	189 aa	Predicted RBP	7.6	□□□□□ -1.19
USP4-213	ENST00000488520	ADCK1	Q86TW2	530 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	GABRG1	Q8N1C3	465 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	PARP8	Q8N3A8	854 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	PACRGL	Q8N7B6	248 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	LRRC75A	Q8NAA5	344 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	OR4K13	Q8NH42	304 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	HSD17B8	Q92506	261 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	KISS1R	Q969F8	398 aa	Predicted RBP	7.6	□□□□□ -1.19
USP4-213	ENST00000488520		Q96M85	177 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	TSPAN32	Q96QS1	320 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	GPX7	Q96SL4	187 aa	Predicted RBP	7.6	□□□□□ -1.19
USP4-213	ENST00000488520	CDADC1	Q9BWV3	514 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	CACNG6	Q9BXT2	260 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	SHARPIN	Q9H0F6	387 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	SEC61A2	Q9H9S3	476 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	RNPEPL1	Q9HAU8	725 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	BARX1	Q9HBU1	254 aa	Predicted RBP	7.6	□□□□□ -1.19
USP4-213	ENST00000488520	CRLF2	Q9HC73	371 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	GPR35	Q9HC97	309 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	SLC7A10	Q9NS82	523 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	TAS2R16	Q9NYV7	291 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	TVP23B	Q9NYZ1	205 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	USE1	Q9NZ43	259 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520	ING1	Q9UK53	422 aa	Predicted RBP	7.6	□□□□□ -1.19
USP4-213	ENST00000488520	ADAM18	Q9Y3Q7	739 aa		7.6	□□□□□ -1.19
USP4-213	ENST00000488520		A0A096LNT2	108 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	PRSS37	A4D1T9	235 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	PRR23D1	E9PI22	279 aa	Predicted RBP	7.59	□□□□□ -1.19
USP4-213	ENST00000488520	ABCD4	O14678	606 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	DHH	O43323	396 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	SLC16A7	O60669	478 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	MITF	O75030	526 aa	Predicted RBP	7.59	□□□□□ -1.19
USP4-213	ENST00000488520	KHDRBS3	O75525	346 aa	Known RBP	7.59	□□□□□ -1.19
USP4-213	ENST00000488520	UPK3A	O75631	287 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	LYZL6	O75951	148 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	ZNF432	O94892	652 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	ATP6V1G2	O95670	118 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	TXNDC12	O95881	172 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	HLA-DQA2	P01906	255 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	IGFBP1	P08833	259 aa	Predicted RBP	7.59	□□□□□ -1.19
USP4-213	ENST00000488520	PRR23D2	P0DMB1	279 aa	Predicted RBP	7.59	□□□□□ -1.19
USP4-213	ENST00000488520	HIST1H1C	P16403	213 aa	Known RBP	7.59	□□□□□ -1.19
USP4-213	ENST00000488520	NPR2	P20594	1047 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	PAX7	P23759	505 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	GRK5	P34947	590 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	CDH11	P55287	796 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	SH3BGR	P55822	239 aa	Predicted RBP	7.59	□□□□□ -1.19
USP4-213	ENST00000488520	LGALS3BP	Q08380	585 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	CEACAM16	Q2WEN9	425 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	ARMC4	Q5T2S8	1044 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	C9orf135	Q5VTT2	229 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	LPCAT4	Q643R3	524 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	CLEC2A	Q6UVW9	174 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	PTCHD4	Q6ZW05	846 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	SSX8	Q7RTT4	187 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	P2RY8	Q86VZ1	359 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	LSR	Q86X29	649 aa	Predicted RBP	7.59	□□□□□ -1.19
USP4-213	ENST00000488520	KRTAP19-1	Q8IUB9	90 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	CCDC36	Q8IYA8	594 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	LNX2	Q8N448	690 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	ZNF525	Q8N782	197 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	RNF141	Q8WVD5	230 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	NSMAF	Q92636	917 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	HDAC2	Q92769	488 aa	Known RBP	7.59	□□□□□ -1.19
USP4-213	ENST00000488520	TMEM54	Q969K7	222 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	MCHR2	Q969V1	340 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	RASD2	Q96D21	266 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	NMNAT3	Q96T66	252 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	RNF121	Q9H920	327 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	CHODL	Q9H9P2	273 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	IMPAD1	Q9NX62	359 aa		7.59	□□□□□ -1.19
USP4-213	ENST00000488520	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	7.59	□□□□□ -1.19
USP4-213	ENST00000488520		A0A1W2PPL8	197 aa		7.58	□□□□□ -1.2
USP4-213	ENST00000488520	SLC22A23	A1A5C7	686 aa		7.58	□□□□□ -1.2
USP4-213	ENST00000488520	SNTN	A6NMZ2	147 aa		7.58	□□□□□ -1.2
USP4-213	ENST00000488520	ZNF99	A8MXY4	864 aa	Predicted RBP	7.58	□□□□□ -1.2
USP4-213	ENST00000488520	SHISA9	B4DS77	424 aa		7.58	□□□□□ -1.2
USP4-213	ENST00000488520	RPL36A-HNRNPH2	H7BZ11	118 aa		7.58	□□□□□ -1.2
USP4-213	ENST00000488520	BHLHE40	O14503	412 aa		7.58	□□□□□ -1.2
USP4-213	ENST00000488520	LMX1B	O60663	402 aa		7.58	□□□□□ -1.2
USP4-213	ENST00000488520	ALPL	P05186	524 aa		7.58	□□□□□ -1.2
USP4-213	ENST00000488520	PGA4	P0DJD7	388 aa		7.58	□□□□□ -1.2

Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms