RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 AKR7LQ8NHP1 331 aa6.98□□□□□ -1.29
USP40-216ENST00000485943 ZNF519Q8TB69 540 aa6.98□□□□□ -1.29
USP40-216ENST00000485943 HTRA1Q92743 480 aa6.98□□□□□ -1.29
USP40-216ENST00000485943 COG8Q96MW5 612 aa6.98□□□□□ -1.29
USP40-216ENST00000485943 GPX7Q96SL4 187 aaPredicted RBP6.98□□□□□ -1.29
USP40-216ENST00000485943 RHNO1Q9BSD3 238 aa6.98□□□□□ -1.29
USP40-216ENST00000485943 DGCR6LQ9BY27 220 aa6.98□□□□□ -1.29
USP40-216ENST00000485943 MRPL13Q9BYD1 178 aaKnown RBP6.98□□□□□ -1.29
USP40-216ENST00000485943 NUAK2Q9H093 628 aa6.98□□□□□ -1.29
USP40-216ENST00000485943 OR51V1Q9H2C8 321 aa6.98□□□□□ -1.29
USP40-216ENST00000485943 SEMA6AQ9H2E6 1030 aa6.98□□□□□ -1.29
USP40-216ENST00000485943 NOX3Q9HBY0 568 aa6.98□□□□□ -1.29
USP40-216ENST00000485943 EMC7Q9NPA0 242 aa6.98□□□□□ -1.29
USP40-216ENST00000485943 POLE4Q9NR33 117 aa6.98□□□□□ -1.29
USP40-216ENST00000485943 DECR2Q9NUI1 292 aa6.98□□□□□ -1.29
USP40-216ENST00000485943 ARMC1Q9NVT9 282 aa6.98□□□□□ -1.29
USP40-216ENST00000485943 GRIP1Q9Y3R0 1128 aa6.98□□□□□ -1.29
USP40-216ENST00000485943 SETXQ7Z333 2677 aaKnown RBP6.98□□□□□ -1.29
USP40-216ENST00000485943 CELSR2Q9HCU4 2923 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 ARRDC5A6NEK1 342 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 FAM171A2A8MVW0 826 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 SHISA9B4DS77 424 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 E7EQL1 145 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 H0YHG0 523 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 M0R233 179 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 ARPC3O15145 178 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 SSX4O60224 188 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 PTP4A3O75365 173 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 SPARCP09486 303 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 CCL2P13500 99 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 OSMP13725 252 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 CD99P14209 185 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 TNFSF4P23510 183 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 IGFBP5P24593 272 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 APEX1P27695 318 aaKnown RBP6.97□□□□□ -1.29
USP40-216ENST00000485943 HSD11B1P28845 292 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 ATP6V1E1P36543 226 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 SLC15A1P46059 708 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 HMGA2P52926 109 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 RAD23AP54725 363 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 KLF3P57682 345 aaPredicted RBP6.97□□□□□ -1.29
USP40-216ENST00000485943 TEKQ02763 1124 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 MALLQ13021 153 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 PGGHGQ32M88 737 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 IQCCQ4KMZ1 466 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 ZMAT1Q5H9K5 638 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 LCN1P1Q5VSP4 162 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 FAM27BQ5VT28 67 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 SHQ1Q6PI26 577 aaKnown RBP6.97□□□□□ -1.29
USP40-216ENST00000485943 SLC25A47Q6Q0C1 308 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 AMIGO2Q86SJ2 522 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 LRRC75A-AS1Q8N1F1 130 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 CLDN22Q8N7P3 220 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 LRRC75AQ8NAA5 344 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 CYB561A3Q8NBI2 242 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 CPEB3Q8NE35 698 aaKnown RBP6.97□□□□□ -1.29
USP40-216ENST00000485943 NUP37Q8NFH4 326 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 OR6N2Q8NGY6 317 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 ABHD4Q8TB40 342 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 SYNPRQ8TBG9 265 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 PYDC1Q8WXC3 89 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 SPTSSAQ969W0 71 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 MBD6Q96DN6 1003 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 NRBF2Q96F24 287 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 Q96MF0 132 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 SYT3Q9BQG1 590 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 TMEM204Q9BSN7 226 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 COPS4Q9BT78 406 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 OR2H1Q9GZK4 316 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 MS4A5Q9H3V2 200 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 FN3KQ9H479 309 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 RIBC2Q9H4K1 309 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 IMPAD1Q9NX62 359 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 SLCO1C1Q9NYB5 712 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 VSX1Q9NZR4 365 aaPredicted RBP6.97□□□□□ -1.29
USP40-216ENST00000485943 ASH2LQ9UBL3 628 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 N6AMT1Q9Y5N5 214 aa6.97□□□□□ -1.29
USP40-216ENST00000485943 PRR14LQ5THK1 2151 aa6.96□□□□□ -1.29
USP40-216ENST00000485943 ARID1AO14497 2285 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 OR6C6A6NF89 314 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 SAC3D1A6NKF1 404 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 SNTNA6NMZ2 147 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 F5H5K5 113 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 TIMM8AO60220 97 aaPredicted RBP6.96□□□□□ -1.3
USP40-216ENST00000485943 TXNDC12O95881 172 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 HEXAP06865 529 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 CSF3P09919 207 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 TSPAN19P0C672 248 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 CTLA4P16410 223 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 PRKACGP22612 351 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 NR4A1P22736 598 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 GRK5P34947 590 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 GLRXP35754 106 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 CDKN2AP42771 156 aaKnown RBP6.96□□□□□ -1.3
USP40-216ENST00000485943 RGS6P49758 472 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 TPTEP56180 551 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 DSCR9P59020 149 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 LSM6P62312 80 aaKnown RBP6.96□□□□□ -1.3
USP40-216ENST00000485943 GINS1Q14691 196 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 KPNB1Q14974 876 aaKnown RBP6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms