RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 DCAF16Q9NXF7 216 aa18.28■□□□□ 0.52
USP40-215ENST00000484528 UBAP1Q9NZ09 502 aa18.28■□□□□ 0.52
USP40-215ENST00000484528 NDRG4Q9ULP0 352 aaKnown RBP18.28■□□□□ 0.52
USP40-215ENST00000484528 ENPP4Q9Y6X5 453 aa18.28■□□□□ 0.52
USP40-215ENST00000484528 TEX13CA0A0J9YWL9 993 aa18.27■□□□□ 0.52
USP40-215ENST00000484528 IMPA2O14732 288 aa18.27■□□□□ 0.52
USP40-215ENST00000484528 UBOX5O94941 541 aa18.27■□□□□ 0.52
USP40-215ENST00000484528 ANPEPP15144 967 aa18.27■□□□□ 0.52
USP40-215ENST00000484528 CTLA4P16410 223 aa18.27■□□□□ 0.52
USP40-215ENST00000484528 ARHGDIAP52565 204 aa18.27■□□□□ 0.52
USP40-215ENST00000484528 PSG7Q13046 419 aa18.27■□□□□ 0.52
USP40-215ENST00000484528 KRR1Q13601 381 aaKnown RBP18.27■□□□□ 0.52
USP40-215ENST00000484528 FGD3Q5JSP0 725 aa18.27■□□□□ 0.52
USP40-215ENST00000484528 CYP4Z1Q86W10 505 aa18.27■□□□□ 0.52
USP40-215ENST00000484528 SEMA6DQ8NFY4 1073 aa18.27■□□□□ 0.52
USP40-215ENST00000484528 EGLN1Q9GZT9 426 aa18.27■□□□□ 0.52
USP40-215ENST00000484528 CYSLTR2Q9NS75 346 aa18.27■□□□□ 0.52
USP40-215ENST00000484528 IL20RAQ9UHF4 553 aa18.27■□□□□ 0.52
USP40-215ENST00000484528 PRSS37A4D1T9 235 aa18.26■□□□□ 0.51
USP40-215ENST00000484528 ICMTO60725 284 aa18.26■□□□□ 0.51
USP40-215ENST00000484528 CCDC22O60826 627 aa18.26■□□□□ 0.51
USP40-215ENST00000484528 ADRA2CP18825 462 aa18.26■□□□□ 0.51
USP40-215ENST00000484528 EPHA1P21709 976 aa18.26■□□□□ 0.51
USP40-215ENST00000484528 MDH1P40925 334 aaKnown RBP18.26■□□□□ 0.51
USP40-215ENST00000484528 SCRN3Q0VDG4 424 aa18.26■□□□□ 0.51
USP40-215ENST00000484528 HSP90B2PQ58FF3 399 aa18.26■□□□□ 0.51
USP40-215ENST00000484528 FAM122BQ7Z309 247 aa18.26■□□□□ 0.51
USP40-215ENST00000484528 SYT9Q86SS6 491 aa18.26■□□□□ 0.51
USP40-215ENST00000484528 SLC7A6Q92536 515 aa18.26■□□□□ 0.51
USP40-215ENST00000484528 TMPRSS13Q9BYE2 586 aa18.26■□□□□ 0.51
USP40-215ENST00000484528 SYT4Q9H2B2 425 aa18.26■□□□□ 0.51
USP40-215ENST00000484528 EGFL7Q9UHF1 273 aa18.26■□□□□ 0.51
USP40-215ENST00000484528 TMEM5Q9Y2B1 443 aa18.26■□□□□ 0.51
USP40-215ENST00000484528 A0A0G2JMP0 313 aa18.25■□□□□ 0.51
USP40-215ENST00000484528 A0A0X1KG70 313 aa18.25■□□□□ 0.51
USP40-215ENST00000484528 H3BSA7 217 aa18.25■□□□□ 0.51
USP40-215ENST00000484528 SOCS2O14508 198 aa18.25■□□□□ 0.51
USP40-215ENST00000484528 SGCEO43556 437 aa18.25■□□□□ 0.51
USP40-215ENST00000484528 DIRAS1O95057 198 aa18.25■□□□□ 0.51
USP40-215ENST00000484528 H1F0P07305 194 aaKnown RBP18.25■□□□□ 0.51
USP40-215ENST00000484528 ADH4P08319 380 aa18.25■□□□□ 0.51
USP40-215ENST00000484528 PSME3P61289 254 aa18.25■□□□□ 0.51
USP40-215ENST00000484528 TNFAIP6P98066 277 aaPredicted RBP18.25■□□□□ 0.51
USP40-215ENST00000484528 MTX3Q5HYI7 312 aa18.25■□□□□ 0.51
USP40-215ENST00000484528 DCAF12L2Q5VW00 463 aa18.25■□□□□ 0.51
USP40-215ENST00000484528 C1orf94Q6P1W5 598 aa18.25■□□□□ 0.51
USP40-215ENST00000484528 ARL9Q6T311 187 aa18.25■□□□□ 0.51
USP40-215ENST00000484528 HACD2Q6Y1H2 254 aa18.25■□□□□ 0.51
USP40-215ENST00000484528 VASH1Q7L8A9 365 aaPredicted RBP18.25■□□□□ 0.51
USP40-215ENST00000484528 C1orf174Q8IYL3 243 aa18.25■□□□□ 0.51
USP40-215ENST00000484528 FAM86B1Q8N7N1 296 aa18.25■□□□□ 0.51
USP40-215ENST00000484528 FAM156AQ8NDB6 213 aa18.25■□□□□ 0.51
USP40-215ENST00000484528 OR4M2Q8NGB6 313 aa18.25■□□□□ 0.51
USP40-215ENST00000484528 DCLRE1CQ96SD1 692 aaKnown RBP18.25■□□□□ 0.51
USP40-215ENST00000484528 NDEL1Q9GZM8 345 aa18.25■□□□□ 0.51
USP40-215ENST00000484528 ANKRD19PQ9H560 264 aa18.25■□□□□ 0.51
USP40-215ENST00000484528 CGGBP1Q9UFW8 167 aaPredicted RBP18.25■□□□□ 0.51
USP40-215ENST00000484528 KLHL21Q9UJP4 597 aa18.25■□□□□ 0.51
USP40-215ENST00000484528 ZDHHC8Q9ULC8 765 aa18.25■□□□□ 0.51
USP40-215ENST00000484528 TRBV4-1A0A0J9YWV2 114 aa18.24■□□□□ 0.51
USP40-215ENST00000484528 SLC16A7O60669 478 aa18.24■□□□□ 0.51
USP40-215ENST00000484528 NDUFB2O95178 105 aa18.24■□□□□ 0.51
USP40-215ENST00000484528 GSTM3P21266 225 aa18.24■□□□□ 0.51
USP40-215ENST00000484528 LIPAP38571 399 aa18.24■□□□□ 0.51
USP40-215ENST00000484528 LIMS1P48059 325 aa18.24■□□□□ 0.51
USP40-215ENST00000484528 ERFP50548 548 aa18.24■□□□□ 0.51
USP40-215ENST00000484528 LCN2P80188 198 aa18.24■□□□□ 0.51
USP40-215ENST00000484528 SCGB2A2Q13296 93 aa18.24■□□□□ 0.51
USP40-215ENST00000484528 ZMAT1Q5H9K5 638 aa18.24■□□□□ 0.51
USP40-215ENST00000484528 RNF148Q8N7C7 305 aa18.24■□□□□ 0.51
USP40-215ENST00000484528 ZNF418Q8TF45 676 aaPredicted RBP18.24■□□□□ 0.51
USP40-215ENST00000484528 RSRC1Q96IZ7 334 aaKnown RBP18.24■□□□□ 0.51
USP40-215ENST00000484528 PLEK2Q9NYT0 353 aa18.24■□□□□ 0.51
USP40-215ENST00000484528 ASH2LQ9UBL3 628 aa18.24■□□□□ 0.51
USP40-215ENST00000484528 RPS6KA6Q9UK32 745 aa18.24■□□□□ 0.51
USP40-215ENST00000484528 SIGLEC7Q9Y286 467 aa18.24■□□□□ 0.51
USP40-215ENST00000484528 COA3Q9Y2R0 106 aaPredicted RBP18.24■□□□□ 0.51
USP40-215ENST00000484528 V9GYQ6 96 aa18.24■□□□□ 0.51
USP40-215ENST00000484528 A0A0A6YYJ9 748 aa18.23■□□□□ 0.51
USP40-215ENST00000484528 CD55P08174 381 aa18.23■□□□□ 0.51
USP40-215ENST00000484528 COX5BP10606 129 aa18.23■□□□□ 0.51
USP40-215ENST00000484528 SDHAP31040 664 aa18.23■□□□□ 0.51
USP40-215ENST00000484528 SLC3A1Q07837 685 aa18.23■□□□□ 0.51
USP40-215ENST00000484528 AQP6Q13520 282 aa18.23■□□□□ 0.51
USP40-215ENST00000484528 SEC23BQ15437 767 aa18.23■□□□□ 0.51
USP40-215ENST00000484528 Q6ZR03 302 aa18.23■□□□□ 0.51
USP40-215ENST00000484528 PTCHD4Q6ZW05 846 aa18.23■□□□□ 0.51
USP40-215ENST00000484528 ZSCAN2Q7Z7L9 614 aaPredicted RBP18.23■□□□□ 0.51
USP40-215ENST00000484528 NPEPL1Q8NDH3 523 aa18.23■□□□□ 0.51
USP40-215ENST00000484528 OR2Z1Q8NG97 314 aa18.23■□□□□ 0.51
USP40-215ENST00000484528 CMBLQ96DG6 245 aa18.23■□□□□ 0.51
USP40-215ENST00000484528 DIRC2Q96SL1 478 aa18.23■□□□□ 0.51
USP40-215ENST00000484528 TBCCD1Q9NVR7 557 aa18.23■□□□□ 0.51
USP40-215ENST00000484528 NDUFAF4Q9P032 175 aa18.23■□□□□ 0.51
USP40-215ENST00000484528 ABCD2Q9UBJ2 740 aa18.23■□□□□ 0.51
USP40-215ENST00000484528 PURGQ9UJV8 347 aaKnown RBP18.23■□□□□ 0.51
USP40-215ENST00000484528 STARD10Q9Y365 291 aa18.23■□□□□ 0.51
USP40-215ENST00000484528 FAM32AQ9Y421 112 aaKnown RBP18.23■□□□□ 0.51
USP40-215ENST00000484528 IER3IP1Q9Y5U9 82 aa18.23■□□□□ 0.51
USP40-215ENST00000484528 A0A1W2PRQ8 180 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms