RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 MPZL1O95297 269 aa13.69□□□□□ -0.22
UPF3A-208ENST00000484246 TFP02787 698 aa13.69□□□□□ -0.22
UPF3A-208ENST00000484246 HMGN1P05114 100 aa13.69□□□□□ -0.22
UPF3A-208ENST00000484246 GGT2P36268 569 aa13.69□□□□□ -0.22
UPF3A-208ENST00000484246 CENPAP49450 140 aa13.69□□□□□ -0.22
UPF3A-208ENST00000484246 PPOXP50336 477 aa13.69□□□□□ -0.22
UPF3A-208ENST00000484246 GDI2P50395 445 aaKnown RBP13.69□□□□□ -0.22
UPF3A-208ENST00000484246 BLVRAP53004 296 aa13.69□□□□□ -0.22
UPF3A-208ENST00000484246 ATP5J2P56134 94 aa13.69□□□□□ -0.22
UPF3A-208ENST00000484246 SNRPD2P62316 118 aaKnown RBP13.69□□□□□ -0.22
UPF3A-208ENST00000484246 ESRRGP62508 458 aa13.69□□□□□ -0.22
UPF3A-208ENST00000484246 GINS1Q14691 196 aa13.69□□□□□ -0.22
UPF3A-208ENST00000484246 RAB35Q15286 201 aa13.69□□□□□ -0.22
UPF3A-208ENST00000484246 Q5PR19 223 aa13.69□□□□□ -0.22
UPF3A-208ENST00000484246 KDM4DQ6B0I6 523 aa13.69□□□□□ -0.22
UPF3A-208ENST00000484246 VASH1Q7L8A9 365 aaPredicted RBP13.69□□□□□ -0.22
UPF3A-208ENST00000484246 AMIGO2Q86SJ2 522 aa13.69□□□□□ -0.22
UPF3A-208ENST00000484246 TGIF2LYQ8IUE0 185 aa13.69□□□□□ -0.22
UPF3A-208ENST00000484246 IQCF1Q8N6M8 205 aa13.69□□□□□ -0.22
UPF3A-208ENST00000484246 IPCEF1Q8WWN9 437 aaPredicted RBP13.69□□□□□ -0.22
UPF3A-208ENST00000484246 PYDC1Q8WXC3 89 aa13.69□□□□□ -0.22
UPF3A-208ENST00000484246 PERPQ96FX8 193 aa13.69□□□□□ -0.22
UPF3A-208ENST00000484246 FOXN4Q96NZ1 517 aa13.69□□□□□ -0.22
UPF3A-208ENST00000484246 HDHD2Q9H0R4 259 aa13.69□□□□□ -0.22
UPF3A-208ENST00000484246 FN3KQ9H479 309 aa13.69□□□□□ -0.22
UPF3A-208ENST00000484246 RERGLQ9H628 205 aa13.69□□□□□ -0.22
UPF3A-208ENST00000484246 SRA1Q9HD15 236 aaKnown RBP13.69□□□□□ -0.22
UPF3A-208ENST00000484246 MRPL22Q9NWU5 206 aaKnown RBP13.69□□□□□ -0.22
UPF3A-208ENST00000484246 ENOPH1Q9UHY7 261 aa13.69□□□□□ -0.22
UPF3A-208ENST00000484246 CMAHPQ9Y471 501 aa13.69□□□□□ -0.22
UPF3A-208ENST00000484246 LHFPL6Q9Y693 200 aa13.69□□□□□ -0.22
UPF3A-208ENST00000484246 PLCE1Q9P212 2302 aa13.69□□□□□ -0.22
UPF3A-208ENST00000484246 TMEM129A0AVI4 362 aa13.68□□□□□ -0.22
UPF3A-208ENST00000484246 SURF4O15260 269 aa13.68□□□□□ -0.22
UPF3A-208ENST00000484246 DOK2O60496 412 aa13.68□□□□□ -0.22
UPF3A-208ENST00000484246 ZNF23P17027 643 aa13.68□□□□□ -0.22
UPF3A-208ENST00000484246 SPI1P17947 270 aa13.68□□□□□ -0.22
UPF3A-208ENST00000484246 CDKN1AP38936 164 aa13.68□□□□□ -0.22
UPF3A-208ENST00000484246 RAD52P43351 418 aa13.68□□□□□ -0.22
UPF3A-208ENST00000484246 PPP2R2BQ00005 443 aa13.68□□□□□ -0.22
UPF3A-208ENST00000484246 TEKQ02763 1124 aa13.68□□□□□ -0.22
UPF3A-208ENST00000484246 GABPB1Q06547 395 aaPredicted RBP13.68□□□□□ -0.22
UPF3A-208ENST00000484246 PCK2Q16822 640 aa13.68□□□□□ -0.22
UPF3A-208ENST00000484246 MSMPQ1L6U9 139 aa13.68□□□□□ -0.22
UPF3A-208ENST00000484246 LINC01590Q5TEZ4 76 aa13.68□□□□□ -0.22
UPF3A-208ENST00000484246 ACSM5Q6NUN0 579 aa13.68□□□□□ -0.22
UPF3A-208ENST00000484246 ZNF774Q6NX45 483 aa13.68□□□□□ -0.22
UPF3A-208ENST00000484246 UNQ6126/PRO20091Q6UXV3 157 aa13.68□□□□□ -0.22
UPF3A-208ENST00000484246 DNM1P46Q6ZS02 220 aa13.68□□□□□ -0.22
UPF3A-208ENST00000484246 PROKR2Q8NFJ6 384 aa13.68□□□□□ -0.22
UPF3A-208ENST00000484246 GJC3Q8NFK1 279 aa13.68□□□□□ -0.22
UPF3A-208ENST00000484246 DOK1Q99704 481 aa13.68□□□□□ -0.22
UPF3A-208ENST00000484246 COQ7Q99807 217 aa13.68□□□□□ -0.22
UPF3A-208ENST00000484246 CYB5R1Q9UHQ9 305 aa13.68□□□□□ -0.22
UPF3A-208ENST00000484246 OAZ3Q9UMX2 235 aa13.68□□□□□ -0.22
UPF3A-208ENST00000484246 POLR1DQ9Y2S0 133 aa13.68□□□□□ -0.22
UPF3A-208ENST00000484246 PMF1-BGLAPU3KQ54 211 aa13.68□□□□□ -0.22
UPF3A-208ENST00000484246 IGLV3-9A0A075B6K5 115 aa13.67□□□□□ -0.22
UPF3A-208ENST00000484246 J3QW42 95 aa13.67□□□□□ -0.22
UPF3A-208ENST00000484246 GPANK1O95872 356 aa13.67□□□□□ -0.22
UPF3A-208ENST00000484246 IGHV4-39P01824 125 aa13.67□□□□□ -0.22
UPF3A-208ENST00000484246 CCL2P13500 99 aa13.67□□□□□ -0.22
UPF3A-208ENST00000484246 ZNF250P15622 560 aa13.67□□□□□ -0.22
UPF3A-208ENST00000484246 PYCR1P32322 319 aa13.67□□□□□ -0.22
UPF3A-208ENST00000484246 WNT5AP41221 380 aa13.67□□□□□ -0.22
UPF3A-208ENST00000484246 CRISP1P54107 249 aa13.67□□□□□ -0.22
UPF3A-208ENST00000484246 UCP2P55851 309 aa13.67□□□□□ -0.22
UPF3A-208ENST00000484246 MEP1BQ16820 701 aa13.67□□□□□ -0.22
UPF3A-208ENST00000484246 KRTAP27-1Q3LI81 207 aa13.67□□□□□ -0.22
UPF3A-208ENST00000484246 CCDC92Q53HC0 331 aaPredicted RBP13.67□□□□□ -0.22
UPF3A-208ENST00000484246 TEX30Q5JUR7 227 aa13.67□□□□□ -0.22
UPF3A-208ENST00000484246 SLC18B1Q6NT16 456 aa13.67□□□□□ -0.22
UPF3A-208ENST00000484246 VHLLQ6RSH7 139 aa13.67□□□□□ -0.22
UPF3A-208ENST00000484246 WFDC11Q8NEX6 87 aa13.67□□□□□ -0.22
UPF3A-208ENST00000484246 OR10H5Q8NGA6 315 aa13.67□□□□□ -0.22
UPF3A-208ENST00000484246 DCLRE1CQ96SD1 692 aaKnown RBP13.67□□□□□ -0.22
UPF3A-208ENST00000484246 TEX12Q9BXU0 123 aa13.67□□□□□ -0.22
UPF3A-208ENST00000484246 KRT84Q9NSB2 600 aa13.67□□□□□ -0.22
UPF3A-208ENST00000484246 TBCCD1Q9NVR7 557 aa13.67□□□□□ -0.22
UPF3A-208ENST00000484246 PLEK2Q9NYT0 353 aa13.67□□□□□ -0.22
UPF3A-208ENST00000484246 TMEFF2Q9UIK5 374 aaPredicted RBP13.67□□□□□ -0.22
UPF3A-208ENST00000484246 COMMD3-BMI1R4GMX3 469 aa13.67□□□□□ -0.22
UPF3A-208ENST00000484246 C5orf49A4QMS7 147 aa13.66□□□□□ -0.22
UPF3A-208ENST00000484246 RER1O15258 196 aa13.66□□□□□ -0.22
UPF3A-208ENST00000484246 PAICSP22234 425 aaKnown RBP13.66□□□□□ -0.22
UPF3A-208ENST00000484246 TUBG1P23258 451 aa13.66□□□□□ -0.22
UPF3A-208ENST00000484246 POU1F1P28069 291 aa13.66□□□□□ -0.22
UPF3A-208ENST00000484246 HTR5AP47898 357 aa13.66□□□□□ -0.22
UPF3A-208ENST00000484246 ELFN2Q5R3F8 820 aa13.66□□□□□ -0.22
UPF3A-208ENST00000484246 RGS7BPQ6MZT1 257 aaPredicted RBP13.66□□□□□ -0.22
UPF3A-208ENST00000484246 RFPL4BQ6ZWI9 263 aa13.66□□□□□ -0.22
UPF3A-208ENST00000484246 OR9Q1Q8NGQ5 310 aa13.66□□□□□ -0.22
UPF3A-208ENST00000484246 OR1F12Q8NHA8 337 aa13.66□□□□□ -0.22
UPF3A-208ENST00000484246 ZNRF4Q8WWF5 429 aa13.66□□□□□ -0.22
UPF3A-208ENST00000484246 PKP2Q99959 881 aa13.66□□□□□ -0.22
UPF3A-208ENST00000484246 TMUB1Q9BVT8 246 aa13.66□□□□□ -0.22
UPF3A-208ENST00000484246 GABARAPL3Q9BY60 117 aa13.66□□□□□ -0.22
UPF3A-208ENST00000484246 PRRG3Q9BZD7 231 aa13.66□□□□□ -0.22
UPF3A-208ENST00000484246 MRPL37Q9BZE1 423 aaKnown RBP13.66□□□□□ -0.22
UPF3A-208ENST00000484246 MARCH7Q9H992 704 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms