RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 CTNNB1P35222 781 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 RCVRNP35243 200 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 ARL2P36404 184 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 NUP62P37198 522 aaPredicted RBP4.43□□□□□ -1.7
USP40-213ENST00000483216 MAGEA2P43356 314 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 STARP49675 285 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 ACOT2P49753 483 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 RAB4BP61018 213 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 CCNA1P78396 465 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 TFAMQ00059 246 aaKnown RBP4.43□□□□□ -1.7
USP40-213ENST00000483216 IFITM3Q01628 133 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 SMARCB1Q12824 385 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 NPRL3Q12980 569 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 DMC1Q14565 340 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 TRAM1Q15629 374 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 AARDQ4LEZ3 155 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 UTF1Q5T230 341 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 ATF7IP2Q5U623 682 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 CST9Q5W186 159 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 SLC22A10Q63ZE4 541 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 KDM4DQ6B0I6 523 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 FAM131AQ6UXB0 335 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 TMEM17Q86X19 198 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 NAXDQ8IW45 347 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 STPG2Q8N412 459 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 CD177Q8N6Q3 437 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 LRRC52Q8N7C0 313 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 LINC00469Q8N7U9 141 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 KLHL30-AS1Q8NEE0 82 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 OR6M1Q8NGM8 313 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 OR4L1Q8NH43 312 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 FANK1Q8TC84 345 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 GPR151Q8TDV0 419 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 RNF139Q8WU17 664 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 RBPMSQ93062 196 aaKnown RBP4.43□□□□□ -1.7
USP40-213ENST00000483216 PTP4A1Q93096 173 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 TCEAL3Q969E4 200 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 GLYATL1Q969I3 302 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 C18orf25Q96B23 403 aaPredicted RBP4.43□□□□□ -1.7
USP40-213ENST00000483216 TESCQ96BS2 214 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 ITCHQ96J02 903 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 KCTD7Q96MP8 289 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 TBL1YQ9BQ87 522 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 TTYH2Q9BSA4 534 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 MARVELD1Q9BSK0 173 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 GABARAPL3Q9BY60 117 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 SLC19A3Q9BZV2 496 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 ROGDIQ9GZN7 287 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 ELL3Q9HB65 397 aaPredicted RBP4.43□□□□□ -1.7
USP40-213ENST00000483216 MID1IP1Q9NPA3 183 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 BIN3Q9NQY0 253 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 RGS18Q9NS28 235 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 RDH8Q9NYR8 311 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 MED11Q9P086 117 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 STOX2Q9P2F5 926 aaPredicted RBP4.43□□□□□ -1.7
USP40-213ENST00000483216 TRPC4Q9UBN4 977 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 SCP2D1Q9UJQ7 156 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 MRTO4Q9UKD2 239 aaKnown RBP4.43□□□□□ -1.7
USP40-213ENST00000483216 IKZF3Q9UKT9 509 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 MYH9P35579 1960 aaKnown RBP4.43□□□□□ -1.7
USP40-213ENST00000483216 LOC285556D6RIA3 1793 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 GLYATL1P3A0A0U1RQE8 302 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 LOC100506127A0A0U1RQW1 187 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 TMEM150BA6NC51 233 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 NAP1L6A6NFF2 107 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 OR5K4A6NMS3 321 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 ZNF670-ZNF695F2Z2N8 137 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 INMT-MINDY4F8WBC2 141 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 M0R233 179 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 ADAM12O43184 909 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 KERAO60938 352 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 ZNF254O75437 659 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 FADS2O95864 444 aaKnown RBP4.42□□□□□ -1.7
USP40-213ENST00000483216 CSF3P09919 207 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 HMGCLP35914 325 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 TGFBR2P37173 567 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 HMGCS2P54868 508 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 PRMT2P55345 433 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 TPI1P60174 286 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 NCS1P62166 190 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 ABRAXAS2Q15018 415 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 PPP1R3AQ16821 1122 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 TATDN3Q17R31 274 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 MICAQ29983 383 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 BCL7AQ4VC05 210 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 MPPE1Q53F39 396 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 PRR30Q53SZ7 412 aaPredicted RBP4.42□□□□□ -1.7
USP40-213ENST00000483216 PYDC2Q56P42 97 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 CDKL4Q5MAI5 379 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 NCBP2-AS2Q69YL0 99 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 RHBDD2Q6NTF9 364 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 AFTPHQ6ULP2 937 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 UQCC3Q6UW78 93 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 RASSF6Q6ZTQ3 369 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 ADGRD2Q7Z7M1 963 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 ZDHHC21Q8IVQ6 265 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 LINC00518Q8N0U6 118 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 ZNF567Q8N184 647 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 STK40Q8N2I9 435 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 EID2Q8N6I1 236 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms