RNA–Protein interactions for RNA: ENST00000482158.1

SF3B1-210, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 772 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-210ENST00000482158 SYNRGQ9UMZ2 1314 aa3.31□□□□□ -1.88
SF3B1-210ENST00000482158 SMKR1H3BMG3 65 aa3.31□□□□□ -1.88
SF3B1-210ENST00000482158 CDH16O75309 829 aa3.31□□□□□ -1.88
SF3B1-210ENST00000482158 HMMRO75330 724 aa3.31□□□□□ -1.88
SF3B1-210ENST00000482158 CLDN11O75508 207 aa3.31□□□□□ -1.88
SF3B1-210ENST00000482158 F2RP25116 425 aa3.31□□□□□ -1.88
SF3B1-210ENST00000482158 CEACAM3P40198 252 aa3.31□□□□□ -1.88
SF3B1-210ENST00000482158 CX3CR1P49238 355 aa3.31□□□□□ -1.88
SF3B1-210ENST00000482158 PRRX1P54821 245 aa3.31□□□□□ -1.88
SF3B1-210ENST00000482158 C21orf59P57076 290 aa3.31□□□□□ -1.88
SF3B1-210ENST00000482158 RCAN2Q14206 197 aa3.31□□□□□ -1.88
SF3B1-210ENST00000482158 C16orf72Q14CZ0 275 aa3.31□□□□□ -1.88
SF3B1-210ENST00000482158 RCN1Q15293 331 aa3.31□□□□□ -1.88
SF3B1-210ENST00000482158 FAM71E1Q6IPT2 247 aa3.31□□□□□ -1.88
SF3B1-210ENST00000482158 TMEM150AQ86TG1 271 aa3.31□□□□□ -1.88
SF3B1-210ENST00000482158 NUBPLQ8TB37 319 aa3.31□□□□□ -1.88
SF3B1-210ENST00000482158 PDXPQ96GD0 296 aa3.31□□□□□ -1.88
SF3B1-210ENST00000482158 SYNDIG1Q9H7V2 258 aa3.31□□□□□ -1.88
SF3B1-210ENST00000482158 GEMIN7Q9H840 131 aaKnown RBP3.31□□□□□ -1.88
SF3B1-210ENST00000482158 RAB20Q9NX57 234 aa3.31□□□□□ -1.88
SF3B1-210ENST00000482158 PTTG3PQ9NZH4 202 aa3.31□□□□□ -1.88
SF3B1-210ENST00000482158 MTCH1Q9NZJ7 389 aa3.31□□□□□ -1.88
SF3B1-210ENST00000482158 ADAMTS13Q76LX8 1427 aa3.3□□□□□ -1.88
SF3B1-210ENST00000482158 INSRP06213 1382 aa3.3□□□□□ -1.88
SF3B1-210ENST00000482158 IGKV2-28A0A075B6P5 120 aa3.3□□□□□ -1.88
SF3B1-210ENST00000482158 A0A1W2PP18 115 aa3.3□□□□□ -1.88
SF3B1-210ENST00000482158 ZNF705GA8MUZ8 300 aaPredicted RBP3.3□□□□□ -1.88
SF3B1-210ENST00000482158 K7EMT4 169 aa3.3□□□□□ -1.88
SF3B1-210ENST00000482158 SCAMP2O15127 329 aaKnown RBP3.3□□□□□ -1.88
SF3B1-210ENST00000482158 IGKV2D-28P01615 120 aa3.3□□□□□ -1.88
SF3B1-210ENST00000482158 STXBP1P61764 594 aaKnown RBP3.3□□□□□ -1.88
SF3B1-210ENST00000482158 LOXL1Q08397 574 aaPredicted RBP3.3□□□□□ -1.88
SF3B1-210ENST00000482158 MOBPQ13875 183 aa3.3□□□□□ -1.88
SF3B1-210ENST00000482158 HSDL1Q3SXM5 330 aa3.3□□□□□ -1.88
SF3B1-210ENST00000482158 THEM4Q5T1C6 240 aa3.3□□□□□ -1.88
SF3B1-210ENST00000482158 MBOAT1Q6ZNC8 495 aa3.3□□□□□ -1.88
SF3B1-210ENST00000482158 WDR86Q86TI4 376 aa3.3□□□□□ -1.88
SF3B1-210ENST00000482158 RIMKLAQ8IXN7 391 aa3.3□□□□□ -1.88
SF3B1-210ENST00000482158 OR10AD1Q8NGE0 317 aa3.3□□□□□ -1.88
SF3B1-210ENST00000482158 TM4SF18Q96CE8 201 aa3.3□□□□□ -1.88
SF3B1-210ENST00000482158 GALNT14Q96FL9 552 aa3.3□□□□□ -1.88
SF3B1-210ENST00000482158 NTN4Q9HB63 628 aa3.3□□□□□ -1.88
SF3B1-210ENST00000482158 ZNF355PQ9NSJ1 428 aa3.3□□□□□ -1.88
SF3B1-210ENST00000482158 CCDC59Q9P031 241 aaKnown RBP3.3□□□□□ -1.88
SF3B1-210ENST00000482158 COL22A1Q8NFW1 1626 aaPredicted RBP3.3□□□□□ -1.88
SF3B1-210ENST00000482158 TNS2Q63HR2 1409 aa3.29□□□□□ -1.88
SF3B1-210ENST00000482158 IGLV1-50A0A075B6I6 118 aa3.29□□□□□ -1.88
SF3B1-210ENST00000482158 A0A075B6Q4 140 aa3.29□□□□□ -1.88
SF3B1-210ENST00000482158 ZNF207O43670 478 aaKnown RBP3.29□□□□□ -1.88
SF3B1-210ENST00000482158 FKBP6O75344 327 aa3.29□□□□□ -1.88
SF3B1-210ENST00000482158 GCM2O75603 506 aaPredicted RBP3.29□□□□□ -1.88
SF3B1-210ENST00000482158 MRPL3P09001 348 aaKnown RBP3.29□□□□□ -1.88
SF3B1-210ENST00000482158 UBTFL6P0CB48 400 aaPredicted RBP3.29□□□□□ -1.88
SF3B1-210ENST00000482158 BCKDHBP21953 392 aa3.29□□□□□ -1.88
SF3B1-210ENST00000482158 RGS8P57771 180 aaPredicted RBP3.29□□□□□ -1.88
SF3B1-210ENST00000482158 ARG2P78540 354 aa3.29□□□□□ -1.88
SF3B1-210ENST00000482158 SP4Q02446 784 aa3.29□□□□□ -1.88
SF3B1-210ENST00000482158 SF3A2Q15428 464 aaKnown RBP3.29□□□□□ -1.88
SF3B1-210ENST00000482158 SPANXN2Q5MJ10 180 aa3.29□□□□□ -1.88
SF3B1-210ENST00000482158 METTL21CQ5VZV1 264 aa3.29□□□□□ -1.88
SF3B1-210ENST00000482158 NPWQ8N729 165 aa3.29□□□□□ -1.88
SF3B1-210ENST00000482158 LYPD6BQ8NI32 183 aa3.29□□□□□ -1.88
SF3B1-210ENST00000482158 FAM81AQ8TBF8 368 aa3.29□□□□□ -1.88
SF3B1-210ENST00000482158 MCUR1Q96AQ8 359 aa3.29□□□□□ -1.88
SF3B1-210ENST00000482158 NEURL3Q96EH8 262 aa3.29□□□□□ -1.88
SF3B1-210ENST00000482158 DNAJC1Q96KC8 554 aaKnown RBP3.29□□□□□ -1.88
SF3B1-210ENST00000482158 LCE3DQ9BYE3 92 aa3.29□□□□□ -1.88
SF3B1-210ENST00000482158 RETNQ9HD89 108 aa3.29□□□□□ -1.88
SF3B1-210ENST00000482158 GCNT4Q9P109 453 aa3.29□□□□□ -1.88
SF3B1-210ENST00000482158 ZNF282Q9UDV7 671 aaPredicted RBP3.29□□□□□ -1.88
SF3B1-210ENST00000482158 KIF26AQ9ULI4 1882 aaPredicted RBP3.28□□□□□ -1.88
SF3B1-210ENST00000482158 IGLV4-60A0A075B6I1 120 aa3.28□□□□□ -1.88
SF3B1-210ENST00000482158 A0A1B0GW55 424 aa3.28□□□□□ -1.88
SF3B1-210ENST00000482158 LYRM9A8MSI8 78 aa3.28□□□□□ -1.88
SF3B1-210ENST00000482158 SGK1O00141 431 aa3.28□□□□□ -1.88
SF3B1-210ENST00000482158 AQP8O94778 261 aa3.28□□□□□ -1.88
SF3B1-210ENST00000482158 SLC25A14O95258 325 aaPredicted RBP3.28□□□□□ -1.88
SF3B1-210ENST00000482158 RHOXF2BP0C7M4 288 aa3.28□□□□□ -1.88
SF3B1-210ENST00000482158 CISD3P0C7P0 127 aa3.28□□□□□ -1.88
SF3B1-210ENST00000482158 DUX4L2P0CJ85 424 aa3.28□□□□□ -1.88
SF3B1-210ENST00000482158 DUX4L3P0CJ86 424 aa3.28□□□□□ -1.88
SF3B1-210ENST00000482158 DUX4L5P0CJ88 424 aa3.28□□□□□ -1.88
SF3B1-210ENST00000482158 DUX4L6P0CJ89 424 aa3.28□□□□□ -1.88
SF3B1-210ENST00000482158 DUX4L7P0CJ90 424 aa3.28□□□□□ -1.88
SF3B1-210ENST00000482158 CT45A6P0DMU7 189 aa3.28□□□□□ -1.88
SF3B1-210ENST00000482158 CT45A5P0DMU8 189 aa3.28□□□□□ -1.88
SF3B1-210ENST00000482158 CT45A7P0DMV0 189 aa3.28□□□□□ -1.88
SF3B1-210ENST00000482158 PSMC3P17980 439 aa3.28□□□□□ -1.88
SF3B1-210ENST00000482158 ATF6P18850 670 aa3.28□□□□□ -1.88
SF3B1-210ENST00000482158 TCN2P20062 427 aa3.28□□□□□ -1.88
SF3B1-210ENST00000482158 GTF2E2P29084 291 aaKnown RBP3.28□□□□□ -1.88
SF3B1-210ENST00000482158 PEX19P40855 299 aa3.28□□□□□ -1.88
SF3B1-210ENST00000482158 SYKP43405 635 aa3.28□□□□□ -1.88
SF3B1-210ENST00000482158 EIF3EP60228 445 aaKnown RBP3.28□□□□□ -1.88
SF3B1-210ENST00000482158 PRR3P79522 188 aaKnown RBP3.28□□□□□ -1.88
SF3B1-210ENST00000482158 CDH17Q12864 832 aa3.28□□□□□ -1.88
SF3B1-210ENST00000482158 PGGHGQ32M88 737 aa3.28□□□□□ -1.88
SF3B1-210ENST00000482158 CT45A1Q5HYN5 189 aa3.28□□□□□ -1.88
SF3B1-210ENST00000482158 UBE2UQ5VVX9 321 aa3.28□□□□□ -1.88
SF3B1-210ENST00000482158 GPR107Q5VW38 600 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms