RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 GAAP10253 952 aa11.98□□□□□ -0.49
UPF3A-204ENST00000475218 ZNF81P51508 661 aa11.98□□□□□ -0.49
UPF3A-204ENST00000475218 SELENOVP59797 346 aa11.98□□□□□ -0.49
UPF3A-204ENST00000475218 PPP1CBP62140 327 aa11.98□□□□□ -0.49
UPF3A-204ENST00000475218 TSTQ16762 297 aaKnown RBP11.98□□□□□ -0.49
UPF3A-204ENST00000475218 PCGF3Q3KNV8 242 aa11.98□□□□□ -0.49
UPF3A-204ENST00000475218 ZNF718Q3SXZ3 478 aa11.98□□□□□ -0.49
UPF3A-204ENST00000475218 AVPI1Q5T686 147 aa11.98□□□□□ -0.49
UPF3A-204ENST00000475218 TMEM154Q6P9G4 183 aa11.98□□□□□ -0.49
UPF3A-204ENST00000475218 VASH1Q7L8A9 365 aaPredicted RBP11.98□□□□□ -0.49
UPF3A-204ENST00000475218 PIGWQ7Z7B1 504 aa11.98□□□□□ -0.49
UPF3A-204ENST00000475218 SLC7A6Q92536 515 aa11.98□□□□□ -0.49
UPF3A-204ENST00000475218 PYURFQ96I23 114 aa11.98□□□□□ -0.49
UPF3A-204ENST00000475218 C4orf45Q96LM5 186 aa11.98□□□□□ -0.49
UPF3A-204ENST00000475218 TMEFF2Q9UIK5 374 aaPredicted RBP11.98□□□□□ -0.49
UPF3A-204ENST00000475218 COA3Q9Y2R0 106 aaPredicted RBP11.98□□□□□ -0.49
UPF3A-204ENST00000475218 IER3IP1Q9Y5U9 82 aa11.98□□□□□ -0.49
UPF3A-204ENST00000475218 IGHV1-69-2A0A0G2JMI3 117 aa11.97□□□□□ -0.49
UPF3A-204ENST00000475218 SOCS2O14508 198 aa11.97□□□□□ -0.49
UPF3A-204ENST00000475218 DEAF1O75398 565 aaPredicted RBP11.97□□□□□ -0.49
UPF3A-204ENST00000475218 ADH4P08319 380 aa11.97□□□□□ -0.49
UPF3A-204ENST00000475218 PCBD1P61457 104 aa11.97□□□□□ -0.49
UPF3A-204ENST00000475218 USP51Q70EK9 711 aa11.97□□□□□ -0.49
UPF3A-204ENST00000475218 RRM2BQ7LG56 351 aa11.97□□□□□ -0.49
UPF3A-204ENST00000475218 PGAM4Q8N0Y7 254 aa11.97□□□□□ -0.49
UPF3A-204ENST00000475218 SNX33Q8WV41 574 aa11.97□□□□□ -0.49
UPF3A-204ENST00000475218 TSSK2Q96PF2 358 aa11.97□□□□□ -0.49
UPF3A-204ENST00000475218 NUAK2Q9H093 628 aa11.97□□□□□ -0.49
UPF3A-204ENST00000475218 LPAR2Q9HBW0 351 aa11.97□□□□□ -0.49
UPF3A-204ENST00000475218 EIF3KQ9UBQ5 218 aaKnown RBP11.97□□□□□ -0.49
UPF3A-204ENST00000475218 GPR160Q9UJ42 338 aa11.97□□□□□ -0.49
UPF3A-204ENST00000475218 UNC119BA6NIH7 251 aa11.97□□□□□ -0.49
UPF3A-204ENST00000475218 B4DSR2 109 aa11.97□□□□□ -0.49
UPF3A-204ENST00000475218 ARPC2O15144 300 aa11.97□□□□□ -0.49
UPF3A-204ENST00000475218 SPRY3O43610 288 aa11.97□□□□□ -0.49
UPF3A-204ENST00000475218 SLC16A7O60669 478 aa11.97□□□□□ -0.49
UPF3A-204ENST00000475218 UBOX5O94941 541 aa11.97□□□□□ -0.49
UPF3A-204ENST00000475218 FAM107AO95990 144 aa11.97□□□□□ -0.49
UPF3A-204ENST00000475218 COX5BP10606 129 aa11.97□□□□□ -0.49
UPF3A-204ENST00000475218 ERFP50548 548 aa11.97□□□□□ -0.49
UPF3A-204ENST00000475218 MVKQ03426 396 aa11.97□□□□□ -0.49
UPF3A-204ENST00000475218 PSG7Q13046 419 aa11.97□□□□□ -0.49
UPF3A-204ENST00000475218 CCDC92Q53HC0 331 aaPredicted RBP11.97□□□□□ -0.49
UPF3A-204ENST00000475218 GPR139Q6DWJ6 353 aa11.97□□□□□ -0.49
UPF3A-204ENST00000475218 CPLX4Q7Z7G2 160 aa11.97□□□□□ -0.49
UPF3A-204ENST00000475218 ALDH16A1Q8IZ83 802 aa11.97□□□□□ -0.49
UPF3A-204ENST00000475218 TMEM158Q8WZ71 300 aa11.97□□□□□ -0.49
UPF3A-204ENST00000475218 MSL2Q9HCI7 577 aa11.97□□□□□ -0.49
UPF3A-204ENST00000475218 DCAF16Q9NXF7 216 aa11.97□□□□□ -0.49
UPF3A-204ENST00000475218 FAM32AQ9Y421 112 aaKnown RBP11.97□□□□□ -0.49
UPF3A-204ENST00000475218 IGLV1-36A0A0B4J1U3 117 aa11.96□□□□□ -0.49
UPF3A-204ENST00000475218 OR6C6A6NF89 314 aa11.96□□□□□ -0.49
UPF3A-204ENST00000475218 H3BSA7 217 aa11.96□□□□□ -0.49
UPF3A-204ENST00000475218 XKRYO14609 159 aa11.96□□□□□ -0.49
UPF3A-204ENST00000475218 DOK2O60496 412 aa11.96□□□□□ -0.49
UPF3A-204ENST00000475218 PPP1R3DO95685 299 aa11.96□□□□□ -0.49
UPF3A-204ENST00000475218 TFP02787 698 aa11.96□□□□□ -0.49
UPF3A-204ENST00000475218 MSMBP08118 114 aa11.96□□□□□ -0.49
UPF3A-204ENST00000475218 GCH1P30793 250 aa11.96□□□□□ -0.49
UPF3A-204ENST00000475218 KCNMB1Q16558 191 aa11.96□□□□□ -0.49
UPF3A-204ENST00000475218 FAM209AQ5JX71 171 aa11.96□□□□□ -0.49
UPF3A-204ENST00000475218 SMARCD3Q6STE5 483 aa11.96□□□□□ -0.49
UPF3A-204ENST00000475218 DPY19L2P2Q6ZN68 376 aa11.96□□□□□ -0.49
UPF3A-204ENST00000475218 Q6ZR03 302 aa11.96□□□□□ -0.49
UPF3A-204ENST00000475218 C1orf229Q6ZS94 237 aaPredicted RBP11.96□□□□□ -0.49
UPF3A-204ENST00000475218 CDRT15Q96T59 188 aa11.96□□□□□ -0.49
UPF3A-204ENST00000475218 SAP30LQ9HAJ7 183 aa11.96□□□□□ -0.49
UPF3A-204ENST00000475218 HIF1ANQ9NWT6 349 aa11.96□□□□□ -0.49
UPF3A-204ENST00000475218 TAGLN3Q9UI15 199 aa11.96□□□□□ -0.49
UPF3A-204ENST00000475218 MAGEL2Q9UJ55 1249 aa11.96□□□□□ -0.49
UPF3A-204ENST00000475218 STARD10Q9Y365 291 aa11.96□□□□□ -0.49
UPF3A-204ENST00000475218 WIPI2Q9Y4P8 454 aa11.96□□□□□ -0.49
UPF3A-204ENST00000475218 SGCEO43556 437 aa11.95□□□□□ -0.5
UPF3A-204ENST00000475218 KHDRBS3O75525 346 aaKnown RBP11.95□□□□□ -0.5
UPF3A-204ENST00000475218 AVPP01185 164 aa11.95□□□□□ -0.5
UPF3A-204ENST00000475218 DBHP09172 617 aa11.95□□□□□ -0.5
UPF3A-204ENST00000475218 HNF1AP20823 631 aa11.95□□□□□ -0.5
UPF3A-204ENST00000475218 HTR5AP47898 357 aa11.95□□□□□ -0.5
UPF3A-204ENST00000475218 HIST1H3AP68431 136 aa11.95□□□□□ -0.5
UPF3A-204ENST00000475218 MEP1BQ16820 701 aa11.95□□□□□ -0.5
UPF3A-204ENST00000475218 RSPO1Q2MKA7 263 aaPredicted RBP11.95□□□□□ -0.5
UPF3A-204ENST00000475218 HIST2H3PS2Q5TEC6 136 aa11.95□□□□□ -0.5
UPF3A-204ENST00000475218 RINLQ6ZS11 566 aa11.95□□□□□ -0.5
UPF3A-204ENST00000475218 HIST2H3AQ71DI3 136 aa11.95□□□□□ -0.5
UPF3A-204ENST00000475218 ADCK1Q86TW2 530 aa11.95□□□□□ -0.5
UPF3A-204ENST00000475218 GLB1L2Q8IW92 636 aa11.95□□□□□ -0.5
UPF3A-204ENST00000475218 TMEM186Q96B77 213 aa11.95□□□□□ -0.5
UPF3A-204ENST00000475218 WACQ9BTA9 647 aa11.95□□□□□ -0.5
UPF3A-204ENST00000475218 NSRP1Q9H0G5 558 aaKnown RBP11.95□□□□□ -0.5
UPF3A-204ENST00000475218 TBCCD1Q9NVR7 557 aa11.95□□□□□ -0.5
UPF3A-204ENST00000475218 ASH2LQ9UBL3 628 aa11.95□□□□□ -0.5
UPF3A-204ENST00000475218 NDRG4Q9ULP0 352 aaKnown RBP11.95□□□□□ -0.5
UPF3A-204ENST00000475218 ARL2BPQ9Y2Y0 163 aa11.95□□□□□ -0.5
UPF3A-204ENST00000475218 LHFPL6Q9Y693 200 aa11.95□□□□□ -0.5
UPF3A-204ENST00000475218 TENM1Q9UKZ4 2725 aa11.95□□□□□ -0.5
UPF3A-204ENST00000475218 ARHGAP32A7KAX9 2087 aa11.95□□□□□ -0.5
UPF3A-204ENST00000475218 RER1O15258 196 aa11.95□□□□□ -0.5
UPF3A-204ENST00000475218 GADD45GO95257 159 aa11.95□□□□□ -0.5
UPF3A-204ENST00000475218 ABHD16AO95870 558 aa11.95□□□□□ -0.5
UPF3A-204ENST00000475218 CD55P08174 381 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms