RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 CHCHD3Q9NX63 227 aaKnown RBP4.84□□□□□ -1.63
VPS41-211ENST00000466017 GLTPQ9NZD2 209 aa4.84□□□□□ -1.63
VPS41-211ENST00000466017 DNAJC27Q9NZQ0 273 aa4.84□□□□□ -1.63
VPS41-211ENST00000466017 EMC3Q9P0I2 261 aa4.84□□□□□ -1.63
VPS41-211ENST00000466017 ERVK-18Q9QC07 812 aa4.84□□□□□ -1.63
VPS41-211ENST00000466017 SPRR3Q9UBC9 169 aa4.84□□□□□ -1.63
VPS41-211ENST00000466017 AASSQ9UDR5 926 aa4.84□□□□□ -1.63
VPS41-211ENST00000466017 SEC14L4Q9UDX3 406 aa4.84□□□□□ -1.63
VPS41-211ENST00000466017 KCNG2Q9UJ96 466 aa4.84□□□□□ -1.63
VPS41-211ENST00000466017 MCTS1Q9ULC4 181 aaKnown RBP4.84□□□□□ -1.63
VPS41-211ENST00000466017 ERGIC3Q9Y282 383 aa4.84□□□□□ -1.63
VPS41-211ENST00000466017 TP53TG5Q9Y2B4 290 aa4.84□□□□□ -1.63
VPS41-211ENST00000466017 GPR52Q9Y2T5 361 aa4.84□□□□□ -1.63
VPS41-211ENST00000466017 TMEM14AQ9Y6G1 99 aa4.84□□□□□ -1.63
VPS41-211ENST00000466017 WDFY3Q8IZQ1 3526 aa4.84□□□□□ -1.63
VPS41-211ENST00000466017 APC2O95996 2303 aa4.84□□□□□ -1.64
VPS41-211ENST00000466017 DNAJC13O75165 2243 aa4.84□□□□□ -1.64
VPS41-211ENST00000466017 MED19A0JLT2 244 aaPredicted RBP4.83□□□□□ -1.64
VPS41-211ENST00000466017 NPIPA2E9PIF3 369 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 NPIPA3F8WFD2 350 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 H0YC42 278 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 ZNF701M0R085 212 aaPredicted RBP4.83□□□□□ -1.64
VPS41-211ENST00000466017 DCTN6O00399 190 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 DHHO43323 396 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 SLC16A7O60669 478 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 RAMP1O60894 148 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 TMCC2O75069 709 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 WDR1O75083 606 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 SLC43A1O75387 559 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 SULT1C4O75897 302 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 SEC14L2O76054 403 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 AQP8O94778 261 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 MT-ND2P03891 347 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 OPN1LWP04000 364 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 YES1P07947 543 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 LIMS3P0CW19 117 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 LIMS4P0CW20 117 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 MYL12AP19105 171 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 ALOX5APP20292 161 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 NPR2P20594 1047 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 GALP22466 123 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 LAP3P28838 519 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 DCTDP32321 178 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 TIMP3P35625 211 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 ATP6V1E1P36543 226 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 RFC3P40938 356 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 TDGF1P3P51864 188 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 NUDT6P53370 316 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 CLDN17P56750 224 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 LSM6P62312 80 aaKnown RBP4.83□□□□□ -1.64
VPS41-211ENST00000466017 POU3F1Q03052 451 aaPredicted RBP4.83□□□□□ -1.64
VPS41-211ENST00000466017 GLO1Q04760 184 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 RUNX1T1Q06455 604 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 KLRB1Q12918 225 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 MLLT11Q13015 90 aaPredicted RBP4.83□□□□□ -1.64
VPS41-211ENST00000466017 GALEQ14376 348 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 GUSBP1Q15486 140 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 SPHARQ15513 63 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 EIF2S3LQ2VIR3 472 aaKnown RBP4.83□□□□□ -1.64
VPS41-211ENST00000466017 GXYLT1Q4G148 440 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 KLHL12Q53G59 568 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 ZNF684Q5T5D7 378 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 NSUN5P2Q63ZY6 315 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 OR2A2Q6IF42 318 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 GDPGP1Q6ZNW5 385 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 AHSA2Q719I0 299 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 ZNF367Q7RTV3 350 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 BCDIN3DQ7Z5W3 292 aaKnown RBP4.83□□□□□ -1.64
VPS41-211ENST00000466017 TMEM123Q8N131 208 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 Q8NA96 180 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 CYB561A3Q8NBI2 242 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 NOXO1Q8NFA2 376 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 BBS1Q8NFJ9 593 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 OR13F1Q8NGS4 319 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 CPT1CQ8TCG5 803 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 ZNRF4Q8WWF5 429 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 ROBO4Q8WZ75 1007 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 SMPDL3BQ92485 455 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 RORBQ92753 470 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 MCHR2Q969V1 340 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 MUL1Q969V5 352 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 DGCR14Q96DF8 476 aaKnown RBP4.83□□□□□ -1.64
VPS41-211ENST00000466017 GMPPAQ96IJ6 420 aaPredicted RBP4.83□□□□□ -1.64
VPS41-211ENST00000466017 COG8Q96MW5 612 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 ZFP3Q96NJ6 502 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 ZNF385AQ96PM9 386 aaKnown RBP4.83□□□□□ -1.64
VPS41-211ENST00000466017 OR2M2Q96R28 347 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 SLX1AQ9BQ83 275 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 MND1Q9BWT6 205 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 SLC25A18Q9H1K4 315 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 SYT4Q9H2B2 425 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 EXO5Q9H790 373 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 IFT22Q9H7X7 185 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 WDR76Q9H967 626 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 RPRD1BQ9NQG5 326 aaKnown RBP4.83□□□□□ -1.64
VPS41-211ENST00000466017 MED29Q9NX70 200 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 CLCF1Q9UBD9 225 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 ZNF835Q9Y2P0 537 aa4.83□□□□□ -1.64
VPS41-211ENST00000466017 TMA7Q9Y2S6 64 aaKnown RBP4.83□□□□□ -1.64
VPS41-211ENST00000466017 LSM2Q9Y333 95 aaKnown RBP4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms