RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 C11orf98E9PRG8 122 aa12.21□□□□□ -0.46
USP40-208ENST00000450966 P04436 131 aa12.21□□□□□ -0.46
USP40-208ENST00000450966 ADRA2CP18825 462 aa12.21□□□□□ -0.46
USP40-208ENST00000450966 SPINT3P49223 89 aa12.21□□□□□ -0.46
USP40-208ENST00000450966 MSMO1Q15800 293 aa12.21□□□□□ -0.46
USP40-208ENST00000450966 DEFB134Q4QY38 66 aa12.21□□□□□ -0.46
USP40-208ENST00000450966 THEM4Q5T1C6 240 aa12.21□□□□□ -0.46
USP40-208ENST00000450966 DND1Q8IYX4 353 aaKnown RBP12.21□□□□□ -0.46
USP40-208ENST00000450966 ARRDC2Q8TBH0 407 aa12.21□□□□□ -0.46
USP40-208ENST00000450966 M1APQ8TC57 530 aa12.21□□□□□ -0.46
USP40-208ENST00000450966 APOOQ9BUR5 198 aa12.21□□□□□ -0.46
USP40-208ENST00000450966 SLC7A7Q9UM01 511 aa12.21□□□□□ -0.46
USP40-208ENST00000450966 ABOP16442 354 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 ABHD17BQ5VST6 288 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 OR4A4PQ8NGN8 299 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 OR5M1Q8NGP8 315 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 LPAR4Q99677 370 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 GGACTQ9BVM4 153 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 M0R2Z0 102 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 IRF2P14316 349 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 BMI1P35226 326 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 ZXDBP98169 803 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 KIR2DS3Q14952 304 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 HYAL4Q2M3T9 481 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 RAET1LQ5VY80 246 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 ZNF547Q8IVP9 402 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 ACVR1CQ8NER5 493 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 GPR150Q8NGU9 434 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 GHITMQ9H3K2 345 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 PAPPAQ13219 1627 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 RGPD2P0DJD1 1756 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 FAM74A7A6NL05 159 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 FTCDNL1E5RQL4 147 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 YIF1AO95070 293 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 HEXAP06865 529 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 SULT1A3P0DMM9 295 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 SULT1A4P0DMN0 295 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 ZNF28P17035 718 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 RRADP55042 308 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 TAS2R38P59533 333 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 SQSTM1Q13501 440 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 PTPRCAPQ14761 206 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 FAM74A3Q4VXF1 159 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 DMRTA1Q5VZB9 504 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 FAM216AQ8WUB2 273 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 ELSPBP1Q96BH3 223 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 UBE2ZQ9H832 354 aaPredicted RBP12.2□□□□□ -0.46
USP40-208ENST00000450966 SIDT1Q9NXL6 827 aaKnown RBP12.2□□□□□ -0.46
USP40-208ENST00000450966 SLC35A3Q9Y2D2 325 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 OTOL1A6NHN0 477 aaPredicted RBP12.2□□□□□ -0.46
USP40-208ENST00000450966 DBX1A6NMT0 343 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 OR52A4PA6NMU1 304 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 J3KTA2 159 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 M0R082 166 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 BCAT2O15382 392 aaPredicted RBP12.2□□□□□ -0.46
USP40-208ENST00000450966 OR8U8P0C7N1 319 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 SLC6A1P30531 599 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 STUMQ69YW2 141 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 VWA1Q6PCB0 445 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 GATSQ8NAP1 163 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 MYH15Q9Y2K3 1946 aa12.2□□□□□ -0.46
USP40-208ENST00000450966 EIF1BO60739 113 aaKnown RBP12.19□□□□□ -0.46
USP40-208ENST00000450966 NDUFB6O95139 128 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 DUSP1P28562 367 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 THBS2P35442 1172 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 EIF1P41567 113 aaKnown RBP12.19□□□□□ -0.46
USP40-208ENST00000450966 CDX1P47902 265 aaPredicted RBP12.19□□□□□ -0.46
USP40-208ENST00000450966 ZNF92Q03936 586 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 SEZ6L2Q6UXD5 910 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 GCNT2Q8N0V5 402 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 LRRC15Q8TF66 581 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 ASB17Q8WXJ9 295 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 ANKRD9Q96BM1 317 aaPredicted RBP12.19□□□□□ -0.46
USP40-208ENST00000450966 GALR1P47211 349 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 UBE2MP61081 183 aaKnown RBP12.19□□□□□ -0.46
USP40-208ENST00000450966 ZNF252P-AS1Q0IIN9 211 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 SFRP5Q5T4F7 317 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 ZNF787Q6DD87 383 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 ARSGQ96EG1 525 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 MAP3K3Q99759 626 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 PAPPA2Q9BXP8 1791 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 DLX2Q07687 328 aaPredicted RBP12.19□□□□□ -0.46
USP40-208ENST00000450966 SKP2Q13309 424 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 ADGRE4PQ86SQ3 457 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 ISOC2Q96AB3 205 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 FAM3DQ96BQ1 224 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 WSB1Q9Y6I7 421 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 MYH1P12882 1939 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 TEX50A0A1B0GTY4 177 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 VSTM2BA6NLU5 285 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 DRGXA6NNA5 263 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 TMEM225BP0DP42 221 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 RAC2P15153 192 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 PCMT1P22061 227 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 DTYMKP23919 212 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 SPPL3Q8TCT6 385 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 ABHD5Q8WTS1 349 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 THOC3Q96J01 351 aaKnown RBP12.19□□□□□ -0.46
USP40-208ENST00000450966 FAM183AA6NL82 134 aa12.19□□□□□ -0.46
USP40-208ENST00000450966 OR5AC1P0C628 307 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms