RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 TEKQ02763 1124 aa16.08■□□□□ 0.16
SHH-203ENST00000435425 GLO1Q04760 184 aa16.08■□□□□ 0.16
SHH-203ENST00000435425 KCNMB1Q16558 191 aa16.08■□□□□ 0.16
SHH-203ENST00000435425 MSMPQ1L6U9 139 aa16.08■□□□□ 0.16
SHH-203ENST00000435425 ACSM5Q6NUN0 579 aa16.08■□□□□ 0.16
SHH-203ENST00000435425 CORO6Q6QEF8 472 aa16.08■□□□□ 0.16
SHH-203ENST00000435425 HIPK1Q86Z02 1210 aa16.08■□□□□ 0.16
SHH-203ENST00000435425 LINC00346Q8IVM7 164 aa16.08■□□□□ 0.16
SHH-203ENST00000435425 OR2T4Q8NH00 348 aa16.08■□□□□ 0.16
SHH-203ENST00000435425 ZNRF4Q8WWF5 429 aa16.08■□□□□ 0.16
SHH-203ENST00000435425 RAB3IPQ96QF0 476 aaPredicted RBP16.08■□□□□ 0.16
SHH-203ENST00000435425 VRK1Q99986 396 aaPredicted RBP16.08■□□□□ 0.16
SHH-203ENST00000435425 SYT3Q9BQG1 590 aa16.08■□□□□ 0.16
SHH-203ENST00000435425 WACQ9BTA9 647 aa16.08■□□□□ 0.16
SHH-203ENST00000435425 MRPL37Q9BZE1 423 aaKnown RBP16.08■□□□□ 0.16
SHH-203ENST00000435425 PAPOLBQ9NRJ5 636 aaKnown RBP16.08■□□□□ 0.16
SHH-203ENST00000435425 PLEK2Q9NYT0 353 aa16.08■□□□□ 0.16
SHH-203ENST00000435425 EIF3KQ9UBQ5 218 aaKnown RBP16.08■□□□□ 0.16
SHH-203ENST00000435425 TVP23AA6NH52 213 aa16.07■□□□□ 0.16
SHH-203ENST00000435425 SNAP29O95721 258 aa16.07■□□□□ 0.16
SHH-203ENST00000435425 CLUP10909 449 aa16.07■□□□□ 0.16
SHH-203ENST00000435425 ZNF3P17036 446 aa16.07■□□□□ 0.16
SHH-203ENST00000435425 RAD52P43351 418 aa16.07■□□□□ 0.16
SHH-203ENST00000435425 HTR5AP47898 357 aa16.07■□□□□ 0.16
SHH-203ENST00000435425 UCP2P55851 309 aa16.07■□□□□ 0.16
SHH-203ENST00000435425 RPS23P62266 143 aaKnown RBP16.07■□□□□ 0.16
SHH-203ENST00000435425 EFNB3Q15768 340 aa16.07■□□□□ 0.16
SHH-203ENST00000435425 TMEM236Q5W0B7 351 aa16.07■□□□□ 0.16
SHH-203ENST00000435425 RGS7BPQ6MZT1 257 aaPredicted RBP16.07■□□□□ 0.16
SHH-203ENST00000435425 SLC27A4Q6P1M0 643 aa16.07■□□□□ 0.16
SHH-203ENST00000435425 LRP11Q86VZ4 500 aa16.07■□□□□ 0.16
SHH-203ENST00000435425 SLC26A10Q8NG04 563 aa16.07■□□□□ 0.16
SHH-203ENST00000435425 MRPL24Q96A35 216 aaKnown RBP16.07■□□□□ 0.16
SHH-203ENST00000435425 CDADC1Q9BWV3 514 aa16.07■□□□□ 0.16
SHH-203ENST00000435425 MED20Q9H944 212 aa16.07■□□□□ 0.16
SHH-203ENST00000435425 CMC2Q9NRP2 79 aa16.07■□□□□ 0.16
SHH-203ENST00000435425 DUSP13Q9UII6 198 aa16.07■□□□□ 0.16
SHH-203ENST00000435425 ARFGEF3Q5TH69 2177 aa16.07■□□□□ 0.16
SHH-203ENST00000435425 RTTNQ86VV8 2226 aa16.06■□□□□ 0.16
SHH-203ENST00000435425 TMEM129A0AVI4 362 aa16.06■□□□□ 0.16
SHH-203ENST00000435425 FAM183AA6NL82 134 aa16.06■□□□□ 0.16
SHH-203ENST00000435425 RER1O15258 196 aa16.06■□□□□ 0.16
SHH-203ENST00000435425 SSX4O60224 188 aa16.06■□□□□ 0.16
SHH-203ENST00000435425 MITFO75030 526 aaPredicted RBP16.06■□□□□ 0.16
SHH-203ENST00000435425 CD99P14209 185 aa16.06■□□□□ 0.16
SHH-203ENST00000435425 ZNF823P16415 610 aa16.06■□□□□ 0.16
SHH-203ENST00000435425 CCDC92Q53HC0 331 aaPredicted RBP16.06■□□□□ 0.16
SHH-203ENST00000435425 FAHD1Q6P587 224 aa16.06■□□□□ 0.16
SHH-203ENST00000435425 TMEM154Q6P9G4 183 aa16.06■□□□□ 0.16
SHH-203ENST00000435425 LYPD4Q6UWN0 246 aa16.06■□□□□ 0.16
SHH-203ENST00000435425 PRSS57Q6UWY2 283 aa16.06■□□□□ 0.16
SHH-203ENST00000435425 VASH1Q7L8A9 365 aaPredicted RBP16.06■□□□□ 0.16
SHH-203ENST00000435425 ZDHHC13Q8IUH4 622 aa16.06■□□□□ 0.16
SHH-203ENST00000435425 OR1J1Q8NGS3 322 aa16.06■□□□□ 0.16
SHH-203ENST00000435425 SLC7A6Q92536 515 aa16.06■□□□□ 0.16
SHH-203ENST00000435425 RBM4Q9BWF3 364 aaKnown RBP16.06■□□□□ 0.16
SHH-203ENST00000435425 DYNLRB1Q9NP97 96 aa16.06■□□□□ 0.16
SHH-203ENST00000435425 KRT84Q9NSB2 600 aa16.06■□□□□ 0.16
SHH-203ENST00000435425 MRPL22Q9NWU5 206 aaKnown RBP16.06■□□□□ 0.16
SHH-203ENST00000435425 NDRG4Q9ULP0 352 aaKnown RBP16.06■□□□□ 0.16
SHH-203ENST00000435425 LHFPL6Q9Y693 200 aa16.06■□□□□ 0.16
SHH-203ENST00000435425 SAC3D1A6NKF1 404 aa16.05■□□□□ 0.16
SHH-203ENST00000435425 H7C417 338 aa16.05■□□□□ 0.16
SHH-203ENST00000435425 SPI1P17947 270 aa16.05■□□□□ 0.16
SHH-203ENST00000435425 WNT5AP41221 380 aa16.05■□□□□ 0.16
SHH-203ENST00000435425 NUDT6P53370 316 aa16.05■□□□□ 0.16
SHH-203ENST00000435425 CRISP1P54107 249 aa16.05■□□□□ 0.16
SHH-203ENST00000435425 CDK5Q00535 292 aa16.05■□□□□ 0.16
SHH-203ENST00000435425 CLEC12BQ2HXU8 276 aa16.05■□□□□ 0.16
SHH-203ENST00000435425 ALKBH6Q3KRA9 238 aa16.05■□□□□ 0.16
SHH-203ENST00000435425 SPATA46Q5T0L3 261 aa16.05■□□□□ 0.16
SHH-203ENST00000435425 ZCCHC24Q8N2G6 241 aaKnown RBP16.05■□□□□ 0.16
SHH-203ENST00000435425 GJC3Q8NFK1 279 aa16.05■□□□□ 0.16
SHH-203ENST00000435425 OR6K6Q8NGW6 343 aa16.05■□□□□ 0.16
SHH-203ENST00000435425 OR2AJ1Q8NGZ0 328 aa16.05■□□□□ 0.16
SHH-203ENST00000435425 ABHD4Q8TB40 342 aa16.05■□□□□ 0.16
SHH-203ENST00000435425 DNAJC9Q8WXX5 260 aa16.05■□□□□ 0.16
SHH-203ENST00000435425 CENPNQ96H22 339 aaPredicted RBP16.05■□□□□ 0.16
SHH-203ENST00000435425 DOK1Q99704 481 aa16.05■□□□□ 0.16
SHH-203ENST00000435425 PKP2Q99959 881 aa16.05■□□□□ 0.16
SHH-203ENST00000435425 BCL2L14Q9BZR8 327 aa16.05■□□□□ 0.16
SHH-203ENST00000435425 BARX1Q9HBU1 254 aaPredicted RBP16.05■□□□□ 0.16
SHH-203ENST00000435425 GRIP1Q9Y3R0 1128 aa16.05■□□□□ 0.16
SHH-203ENST00000435425 A0A1W2PPW3 197 aa16.04■□□□□ 0.16
SHH-203ENST00000435425 TRIM64A6NGJ6 449 aa16.04■□□□□ 0.16
SHH-203ENST00000435425 TRIM64BA6NI03 449 aa16.04■□□□□ 0.16
SHH-203ENST00000435425 LY6HO94772 140 aa16.04■□□□□ 0.16
SHH-203ENST00000435425 CLPTM1O96005 669 aa16.04■□□□□ 0.16
SHH-203ENST00000435425 COX5BP10606 129 aa16.04■□□□□ 0.16
SHH-203ENST00000435425 PCSK6P29122 969 aa16.04■□□□□ 0.16
SHH-203ENST00000435425 FMO3P31513 532 aa16.04■□□□□ 0.16
SHH-203ENST00000435425 RPS27P42677 84 aaKnown RBP16.04■□□□□ 0.16
SHH-203ENST00000435425 SLC25A1P53007 311 aa16.04■□□□□ 0.16
SHH-203ENST00000435425 ZNF101Q8IZC7 436 aa16.04■□□□□ 0.16
SHH-203ENST00000435425 ZNF511Q8NB15 262 aa16.04■□□□□ 0.16
SHH-203ENST00000435425 OR1F12Q8NHA8 337 aa16.04■□□□□ 0.16
SHH-203ENST00000435425 SYNPRQ8TBG9 265 aa16.04■□□□□ 0.16
SHH-203ENST00000435425 PLEKHA8Q96JA3 519 aa16.04■□□□□ 0.16
SHH-203ENST00000435425 C4orf45Q96LM5 186 aa16.04■□□□□ 0.16
SHH-203ENST00000435425 SORCS2Q96PQ0 1159 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms