RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 TGFBR3Q03167 851 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 SCRN3Q0VDG4 424 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 GUSBP1Q15486 140 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 NRN1LQ496H8 165 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 FAM27BQ5VT28 67 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 LIPKQ5VXJ0 399 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 KLHL24Q6TFL4 600 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 LRRN1Q6UXK5 716 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 TFAP2EQ6VUC0 442 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 SLC16A14Q7RTX9 510 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 DOLPP1Q86YN1 238 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 ZNF679Q8IYX0 411 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 SLC22A24Q8N4F4 322 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 ZFP41Q8N8Y5 198 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 ST6GALNAC3Q8NDV1 305 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 GJC3Q8NFK1 279 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 SLAMF6Q96DU3 332 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 ZNF837Q96EG3 531 aaPredicted RBP15.07■□□□□ 0
CCDC28B-202ENST00000421922 FUNDC2Q9BWH2 189 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 TINAGQ9UJW2 476 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 ZNF835Q9Y2P0 537 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 LHFPL6Q9Y693 200 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 ATMQ13315 3056 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 RP1L1Q8IWN7 2480 aaPredicted RBP15.06■□□□□ 0
CCDC28B-202ENST00000421922 ZNF878C9JN71 531 aa15.06■□□□□ 0
CCDC28B-202ENST00000421922 MAGEB4O15481 346 aaPredicted RBP15.06■□□□□ 0
CCDC28B-202ENST00000421922 ZNF254O75437 659 aa15.06■□□□□ 0
CCDC28B-202ENST00000421922 CNOT4O95628 575 aaKnown RBP15.06■□□□□ 0
CCDC28B-202ENST00000421922 PSKH1P11801 424 aa15.06■□□□□ 0
CCDC28B-202ENST00000421922 CPEP16870 476 aa15.06■□□□□ 0
CCDC28B-202ENST00000421922 CELP19835 753 aa15.06■□□□□ 0
CCDC28B-202ENST00000421922 HSD11B1P28845 292 aa15.06■□□□□ 0
CCDC28B-202ENST00000421922 KIR2DL2P43627 348 aaPredicted RBP15.06■□□□□ 0
CCDC28B-202ENST00000421922 OR7E24Q6IFN5 339 aa15.06■□□□□ 0
CCDC28B-202ENST00000421922 VWA1Q6PCB0 445 aa15.06■□□□□ 0
CCDC28B-202ENST00000421922 ZNF420Q8TAQ5 688 aaPredicted RBP15.06■□□□□ 0
CCDC28B-202ENST00000421922 NANOS1Q8WY41 292 aaKnown RBP15.06■□□□□ 0
CCDC28B-202ENST00000421922 YIPF6Q96EC8 236 aa15.06■□□□□ 0
CCDC28B-202ENST00000421922 PELI1Q96FA3 418 aa15.06■□□□□ 0
CCDC28B-202ENST00000421922 AMELYQ99218 206 aa15.06■□□□□ 0
CCDC28B-202ENST00000421922 SFXN3Q9BWM7 321 aa15.06■□□□□ 0
CCDC28B-202ENST00000421922 ELOVL3Q9HB03 270 aa15.06■□□□□ 0
CCDC28B-202ENST00000421922 SLCO1C1Q9NYB5 712 aa15.06■□□□□ 0
CCDC28B-202ENST00000421922 RSL24D1Q9UHA3 163 aaKnown RBP15.06■□□□□ 0
CCDC28B-202ENST00000421922 MRM2Q9UI43 246 aaKnown RBP15.06■□□□□ 0
CCDC28B-202ENST00000421922 GTF2A1LQ9UNN4 478 aa15.06■□□□□ 0
CCDC28B-202ENST00000421922 BOD1L1Q8NFC6 3051 aa15.05■□□□□ -0
CCDC28B-202ENST00000421922 H3BSA7 217 aa15.05■□□□□ -0
CCDC28B-202ENST00000421922 C1QL1O75973 258 aa15.05■□□□□ -0
CCDC28B-202ENST00000421922 PSMA1P25786 263 aaKnown RBP15.05■□□□□ -0
CCDC28B-202ENST00000421922 ROM1Q03395 351 aa15.05■□□□□ -0
CCDC28B-202ENST00000421922 ENDOGQ14249 297 aaKnown RBP15.05■□□□□ -0
CCDC28B-202ENST00000421922 ZNF829Q3KNS6 432 aaPredicted RBP15.05■□□□□ -0
CCDC28B-202ENST00000421922 SLC36A2Q495M3 483 aa15.05■□□□□ -0
CCDC28B-202ENST00000421922 CCDC58Q4VC31 144 aa15.05■□□□□ -0
CCDC28B-202ENST00000421922 LIPNQ5VXI9 398 aa15.05■□□□□ -0
CCDC28B-202ENST00000421922 DEGS2Q6QHC5 323 aa15.05■□□□□ -0
CCDC28B-202ENST00000421922 ARL9Q6T311 187 aa15.05■□□□□ -0
CCDC28B-202ENST00000421922 ZNF485Q8NCK3 441 aa15.05■□□□□ -0
CCDC28B-202ENST00000421922 ST7LQ8TDW4 575 aa15.05■□□□□ -0
CCDC28B-202ENST00000421922 RAB2BQ8WUD1 216 aa15.05■□□□□ -0
CCDC28B-202ENST00000421922 DGCR14Q96DF8 476 aaKnown RBP15.05■□□□□ -0
CCDC28B-202ENST00000421922 SH3GL3Q99963 347 aa15.05■□□□□ -0
CCDC28B-202ENST00000421922 WACQ9BTA9 647 aa15.05■□□□□ -0
CCDC28B-202ENST00000421922 RNF121Q9H920 327 aa15.05■□□□□ -0
CCDC28B-202ENST00000421922 NDUFB11Q9NX14 153 aa15.05■□□□□ -0
CCDC28B-202ENST00000421922 GALNT8Q9NY28 637 aa15.05■□□□□ -0
CCDC28B-202ENST00000421922 LRP12Q9Y561 859 aa15.05■□□□□ -0
CCDC28B-202ENST00000421922 CEPT1Q9Y6K0 416 aa15.05■□□□□ -0
CCDC28B-202ENST00000421922 INTS1Q8N201 2190 aaKnown RBP15.04■□□□□ -0
CCDC28B-202ENST00000421922 TRGV8A0A0C4DH27 118 aa15.04■□□□□ -0
CCDC28B-202ENST00000421922 CIB4A0PJX0 185 aa15.04■□□□□ -0
CCDC28B-202ENST00000421922 GLI4P10075 376 aa15.04■□□□□ -0
CCDC28B-202ENST00000421922 CTSSP25774 331 aa15.04■□□□□ -0
CCDC28B-202ENST00000421922 HOXC12P31275 282 aa15.04■□□□□ -0
CCDC28B-202ENST00000421922 PSMB10P40306 273 aa15.04■□□□□ -0
CCDC28B-202ENST00000421922 GTF2A1P52655 376 aaPredicted RBP15.04■□□□□ -0
CCDC28B-202ENST00000421922 TMBIM6P55061 237 aa15.04■□□□□ -0
CCDC28B-202ENST00000421922 GRB2P62993 217 aaKnown RBP15.04■□□□□ -0
CCDC28B-202ENST00000421922 PMPCAQ10713 525 aa15.04■□□□□ -0
CCDC28B-202ENST00000421922 FOXF2Q12947 444 aa15.04■□□□□ -0
CCDC28B-202ENST00000421922 TPBGQ13641 420 aa15.04■□□□□ -0
CCDC28B-202ENST00000421922 TMEM211Q6ICI0 200 aa15.04■□□□□ -0
CCDC28B-202ENST00000421922 RPL22L1Q6P5R6 122 aaKnown RBP15.04■□□□□ -0
CCDC28B-202ENST00000421922 CFAP77Q6ZQR2 320 aa15.04■□□□□ -0
CCDC28B-202ENST00000421922 Q6ZT83 130 aa15.04■□□□□ -0
CCDC28B-202ENST00000421922 SEM1Q6ZVN7 128 aa15.04■□□□□ -0
CCDC28B-202ENST00000421922 ANKRD13BQ86YJ7 626 aa15.04■□□□□ -0
CCDC28B-202ENST00000421922 PHC2Q8IXK0 858 aa15.04■□□□□ -0
CCDC28B-202ENST00000421922 RPRMLQ8N4K4 120 aa15.04■□□□□ -0
CCDC28B-202ENST00000421922 RNF133Q8WVZ7 376 aa15.04■□□□□ -0
CCDC28B-202ENST00000421922 MAP6Q96JE9 813 aa15.04■□□□□ -0
CCDC28B-202ENST00000421922 NIPAL2Q9H841 368 aa15.04■□□□□ -0
CCDC28B-202ENST00000421922 EXOSC4Q9NPD3 245 aaKnown RBP15.04■□□□□ -0
CCDC28B-202ENST00000421922 PLEK2Q9NYT0 353 aa15.04■□□□□ -0
CCDC28B-202ENST00000421922 ENPP5Q9UJA9 477 aa15.04■□□□□ -0
CCDC28B-202ENST00000421922 GRIP1Q9Y3R0 1128 aa15.04■□□□□ -0
CCDC28B-202ENST00000421922 KALRNO60229 2985 aa15.04■□□□□ -0
CCDC28B-202ENST00000421922 A0A096LPE4 126 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 TRBV2A0A0J9YWF9 115 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms