RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 DHDHQ9UQ10 334 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 DTX4Q9Y2E6 619 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 R4GMQ9 66 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 THADAQ6YHU6 1953 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 A0A1W2PQF6 199 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 C9orf170A2RU37 121 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 METTL21EPA6NDL7 271 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 A6NIZ1 184 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 GRXCR1A8MXD5 290 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 H7C2Y5 167 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 RPP14O95059 124 aaKnown RBP5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 SPDEFO95238 335 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 SIX6O95475 246 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 AMY2AP04746 511 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 PTHLHP12272 177 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 TPT1P13693 172 aaKnown RBP5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 FOSL2P15408 326 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 GABRA4P48169 554 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 SOX2P48431 317 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 MMP16P51512 607 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 RIDAP52758 137 aaKnown RBP5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 GPR85P60893 370 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 RAP1BP61224 184 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 RAP1AP62834 184 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 VAX1Q5SQQ9 334 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 ELP2Q6IA86 826 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 TANGO2Q6ICL3 276 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 ATRAIDQ6UW56 229 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 DPY19L4Q7Z388 723 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 BPIFB2Q8N4F0 458 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 PAQR4Q8N4S7 273 aaPredicted RBP5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 OR5AP2Q8NGF4 316 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 OR6N2Q8NGY6 317 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 OR10AC1Q8NH08 325 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 OR52N5Q8NH56 324 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 TSEN15Q8WW01 171 aaKnown RBP5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 VRK1Q99986 396 aaPredicted RBP5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 EGLN1Q9GZT9 426 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 MS4A7Q9GZW8 240 aaPredicted RBP5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 ATG5Q9H1Y0 275 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 WDR13Q9H1Z4 485 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 ELOVL3Q9HB03 270 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 IKZF2Q9UKS7 526 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 ZNF346Q9UL40 294 aaKnown RBP5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 UTRNP46939 3433 aa5.15□□□□□ -1.58
CCDC88A-203ENST00000412148 A0A1B0GVT2 93 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 TVP23AA6NH52 213 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 H0YC42 278 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 RAB27BO00194 218 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 SCDO00767 359 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 KDM4BO94953 1096 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 SNAPINO95295 136 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 IGLV3-19P01714 112 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 APOC3P02656 99 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 CRHP06850 196 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 GSTP1P09211 210 aaKnown RBP5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 ACRP10323 421 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 PRKACAP17612 351 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 RFC3P40938 356 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 PMELP40967 661 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 MAGEB1P43366 347 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 SCRN3Q0VDG4 424 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 GRM7Q14831 915 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 TMEM196Q5HYL7 178 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 NKAPLQ5M9Q1 402 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 HOGA1Q86XE5 327 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 ZNF584Q8IVC4 421 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 CARFQ8N187 725 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 ARRDC1Q8N5I2 433 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 ZNF614Q8N883 585 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 C19orf47Q8N9M1 422 aaKnown RBP5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 OR51A4Q8NGJ6 313 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 OR1J2Q8NGS2 313 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 THAP6Q8TBB0 222 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 RHBDD1Q8TEB9 315 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 RNF141Q8WVD5 230 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 ARL11Q969Q4 196 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 MRGPRFQ96AM1 343 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 TCTN2Q96GX1 697 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 AQP10Q96PS8 301 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 PTDSS2Q9BVG9 487 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 TMEM185BQ9H7F4 350 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 RAB18Q9NP72 206 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 G6PC2Q9NQR9 355 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 MRPL22Q9NWU5 206 aaKnown RBP5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 COQ3Q9NZJ6 369 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 MSRAQ9UJ68 235 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 GDF2Q9UK05 429 aaPredicted RBP5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 KLK13Q9UKR3 277 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 VSIG4Q9Y279 399 aa5.15□□□□□ -1.59
CCDC88A-203ENST00000412148 A0A087WV48 116 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 ALG1L2C9J202 215 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 XKRYO14609 159 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 TAAR5O14804 337 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 EFSO43281 561 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 CA11O75493 328 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 TNFP01375 233 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 IGKV3-11P04433 115 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 CHRM2P08172 466 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms