RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 ARHGAP21Q5T5U3 1957 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 CACNA1CQ13936 2221 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 TUBAL3A6NHL2 446 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 NR5A2O00482 541 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 KIAA0513O60268 411 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 TOXO94900 526 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 LINGO3P0C6S8 592 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 UBTFL6P0CB48 400 aaPredicted RBP5.54□□□□□ -1.52
USP40-202ENST00000409945 MRPL19P49406 292 aaKnown RBP5.54□□□□□ -1.52
USP40-202ENST00000409945 CARD18P57730 90 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 DSTNP60981 165 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 ZNF117Q03924 483 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 PON3Q15166 354 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 PLPPR5Q32ZL2 321 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 LIN52Q52LA3 116 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 C3orf33Q6P1S2 294 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 ARSKQ6UWY0 536 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 APOOLQ6UXV4 268 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 POMGNT2Q8NAT1 580 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 OR2AJ1Q8NGZ0 328 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 OR2V1Q8NHB1 315 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 DNAJC9Q8WXX5 260 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 RAB8BQ92930 207 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 SPDL1Q96EA4 605 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 MARK4Q96L34 752 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 RBM24Q9BX46 236 aaKnown RBP5.54□□□□□ -1.52
USP40-202ENST00000409945 TPT1P8Q9HAU6 139 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 HIF1ANQ9NWT6 349 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 CLCF1Q9UBD9 225 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 PROCRQ9UNN8 238 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 IFT52Q9Y366 437 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 NCKAP5O14513 1909 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 NUP214P35658 2090 aaPredicted RBP5.53□□□□□ -1.52
USP40-202ENST00000409945 NAV2Q8IVL1 2488 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 MAST4O15021 2626 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 NOTCH2Q04721 2471 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 A0A096LPI6 279 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 NPIPA5A0A0B4J1W7 369 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 A0A0G2JPF8 293 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 ENO4A6NNW6 628 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 HNRNPCL2B2RXH8 293 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 HNRNPCL3B7ZW38 293 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 NPIPA7E9PJI5 369 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 HMGN4O00479 90 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 HS3ST1O14792 307 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 AIM2O14862 343 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 SCN2BO60939 215 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 UGT2B17O75795 530 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 H6PDO95479 791 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 PMS2P2O95744 297 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 ALPLP05186 524 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 IGKV2-30P06310 120 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 RPSAP08865 295 aaKnown RBP5.53□□□□□ -1.52
USP40-202ENST00000409945 NPIPA8P0DM63 369 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 HNRNPCL4P0DMR1 293 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 ANPEPP15144 967 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 RPS2P15880 293 aaKnown RBP5.53□□□□□ -1.52
USP40-202ENST00000409945 SFTPDP35247 375 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 ZNF136P52737 540 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 RAD23AP54725 363 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 CASP9P55211 416 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 B3GALT5-AS1P59052 145 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 KCNJ10P78508 379 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 TLE4Q04727 773 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 CD226Q15762 336 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 FBXL19-AS1Q494R0 122 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 ANKDD1AQ495B1 522 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 AGKQ53H12 422 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 ZFP1Q6P2D0 407 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 LUZP2Q86TE4 346 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 FBXL14Q8N1E6 418 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 CLEC4FQ8N1N0 589 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 SLC43A2Q8N370 569 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 OR5M1Q8NGP8 315 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 PNPT1Q8TCS8 783 aaKnown RBP5.53□□□□□ -1.52
USP40-202ENST00000409945 FAM222BQ8WU58 562 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 ARSGQ96EG1 525 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 GMPPAQ96IJ6 420 aaPredicted RBP5.53□□□□□ -1.52
USP40-202ENST00000409945 TEX37Q96LM6 180 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 THUMPD3Q9BV44 507 aaKnown RBP5.53□□□□□ -1.52
USP40-202ENST00000409945 S100A14Q9HCY8 104 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 EXOSC3Q9NQT5 275 aaKnown RBP5.53□□□□□ -1.52
USP40-202ENST00000409945 LEF1Q9UJU2 399 aaPredicted RBP5.53□□□□□ -1.52
USP40-202ENST00000409945 ICAM5Q9UMF0 924 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 POMPQ9Y244 141 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 NDUFAF1Q9Y375 327 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 KCNE3Q9Y6H6 103 aa5.53□□□□□ -1.52
USP40-202ENST00000409945 TNFSF12-TNFSF13A0A0A6YY99 330 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 BBIP1A8MTZ0 92 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 C9JVG2 144 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 NPIPB9F8W1W9 429 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 FCMRO60667 390 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 PDE5AO76074 875 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 IL12AP29459 219 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 PNRC1Q12796 327 aaPredicted RBP5.52□□□□□ -1.53
USP40-202ENST00000409945 MERTKQ12866 999 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 FOXF1Q12946 379 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 MELKQ14680 651 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 QPRTQ15274 297 aa5.52□□□□□ -1.53
USP40-202ENST00000409945 DDX59Q5T1V6 619 aaKnown RBP eCLIP5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms