RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 OR4D10Q8NGI6 311 aa6.65□□□□□ -1.35
SCN9A-202ENST00000409435 FAM46AQ96IP4 442 aaKnown RBP6.65□□□□□ -1.35
SCN9A-202ENST00000409435 ADGRG7Q96K78 797 aa6.65□□□□□ -1.35
SCN9A-202ENST00000409435 HRASLS5Q96KN8 279 aa6.65□□□□□ -1.35
SCN9A-202ENST00000409435 ZNF331Q9NQX6 463 aaPredicted RBP6.65□□□□□ -1.35
SCN9A-202ENST00000409435 KIAA1456Q9P272 454 aa6.65□□□□□ -1.35
SCN9A-202ENST00000409435 SLC23A2Q9UGH3 650 aa6.65□□□□□ -1.35
SCN9A-202ENST00000409435 RASD1Q9Y272 281 aa6.65□□□□□ -1.35
SCN9A-202ENST00000409435 RPLP1P05386 114 aaKnown RBP6.64□□□□□ -1.35
SCN9A-202ENST00000409435 ZNF44P15621 663 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 MYF6P23409 242 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 SOX2P48431 317 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 TMEM183BQ1AE95 376 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 FFAR4Q5NUL3 377 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 FAM205BPQ63HN1 556 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 SIGIRRQ6IA17 410 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 B3GLCTQ6Y288 498 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 PRSS48Q7RTY5 328 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 PIGCQ92535 297 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 HSH2DQ96JZ2 352 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 EBF4Q9BQW3 602 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 DDX31Q9H8H2 851 aaKnown RBP6.64□□□□□ -1.35
SCN9A-202ENST00000409435 HAO2Q9NYQ3 351 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 ZNF629Q9UEG4 869 aaPredicted RBP6.64□□□□□ -1.35
SCN9A-202ENST00000409435 KCNMB2Q9Y691 235 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 A0A0A6YYJ9 748 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 TRAPPC2LH3BP13 241 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 ITGAMP11215 1152 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 ZNF17P17021 662 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 TACR3P29371 465 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 MEOX2P50222 304 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 SLC18A1P54219 525 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 EDDM3BP56851 147 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 BEX5Q5H9J7 111 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 SPANXN4Q5MJ08 99 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 ABHD17CQ6PCB6 329 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 B3GNT8Q7Z7M8 397 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 MSI2Q96DH6 328 aaKnown RBP6.64□□□□□ -1.35
SCN9A-202ENST00000409435 KCNA7Q96RP8 456 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 THAP7Q9BT49 309 aaPredicted RBP6.64□□□□□ -1.35
SCN9A-202ENST00000409435 SMIM3Q9BZL3 60 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 ENPP5Q9UJA9 477 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 MYH11P35749 1972 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 A0A0B4J2A0 478 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 MROH6A6NGR9 719 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 CD8B2A6NJW9 211 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 LGALS8O00214 317 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 FBXO24O75426 580 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 CD8BP10966 210 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 CD22P20273 847 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 KITLGP21583 273 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 TRHRP34981 398 aaPredicted RBP6.64□□□□□ -1.35
SCN9A-202ENST00000409435 PBX1P40424 430 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 UBE2G2P60604 165 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 MEP1BQ16820 701 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 ACTBL2Q562R1 376 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 ETV3LQ6ZN32 361 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 TCTEX1D1Q8N7M0 179 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 ADPRHL1Q8NDY3 354 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 ZNRF4Q8WWF5 429 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 LINC00615Q96LM1 132 aaPredicted RBP6.64□□□□□ -1.35
SCN9A-202ENST00000409435 EMC7Q9NPA0 242 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 SHPKQ9UHJ6 478 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 ING1Q9UK53 422 aaPredicted RBP6.64□□□□□ -1.35
SCN9A-202ENST00000409435 URB1O60287 2271 aaKnown RBP6.64□□□□□ -1.35
SCN9A-202ENST00000409435 OR6C68A6NDL8 312 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 C17orf112F2Z3M2 114 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 P2RX6O15547 441 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 CNOT4O95628 575 aaKnown RBP6.64□□□□□ -1.35
SCN9A-202ENST00000409435 GRPP07492 148 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 APEHP13798 732 aaKnown RBP6.64□□□□□ -1.35
SCN9A-202ENST00000409435 IVDP26440 423 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 GGT5P36269 586 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 GPR6P46095 362 aaPredicted RBP6.64□□□□□ -1.35
SCN9A-202ENST00000409435 PGFP49763 221 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 SORDQ00796 357 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 MOGAT2Q3SYC2 334 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 ZNF789Q5FWF6 425 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 CCNJQ5T5M9 372 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 BLOC1S3Q6QNY0 202 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 ENTHD1Q8IYW4 607 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 CMTM1Q8IZ96 169 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 LILRA3Q8N6C8 439 aaPredicted RBP6.64□□□□□ -1.35
SCN9A-202ENST00000409435 DEFB108BQ8NET1 73 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 OR13C9Q8NGT0 318 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 FAM103A1Q9BTL3 118 aaKnown RBP6.64□□□□□ -1.35
SCN9A-202ENST00000409435 SPACA1Q9HBV2 294 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 TTRP02766 147 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 PRR35P0CG20 571 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 TMEM225BP0DP42 221 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 MRPS34P82930 218 aaKnown RBP6.64□□□□□ -1.35
SCN9A-202ENST00000409435 ALKBH6Q3KRA9 238 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 LRRC10Q5BKY1 277 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 CTSL3PQ5NE16 218 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 ATP1A1-AS1Q5TC04 95 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 CPZQ66K79 652 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 UNQ9370/PRO34162Q6UXP9 181 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 C12orf54Q6X4T0 127 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 ZNF836Q6ZNA1 936 aa6.64□□□□□ -1.35
SCN9A-202ENST00000409435 OR4N2Q8NGD1 307 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms