RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 STMN3Q9NZ72 180 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 B3GAT1Q9P2W7 334 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 CKLFQ9UBR5 152 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 FARSAQ9Y285 508 aaKnown RBP9.93□□□□□ -0.82
TCOF1-203ENST00000394269 DNAJC13O75165 2243 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 OR2M5A3KFT3 312 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 RER1O15258 196 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 IGHG1P01857 330 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 P04436 131 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 GAAP10253 952 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 HSD11B1P28845 292 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 DDOSTP39656 456 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 EFNB2P52799 333 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 BLVRAP53004 296 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 PITPNAQ00169 270 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 UBE2NLQ5JXB2 153 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 PLXDC2Q6UX71 529 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 RNF128Q8TEB7 428 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 CHAC2Q8WUX2 184 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 YIPF5Q969M3 257 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 P4HTMQ9NXG6 502 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 OR52A1Q9UKL2 312 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 NOTCH2Q04721 2471 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 CENPBD1B2RD01 187 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 SRYQ05066 204 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 GLYATL3Q5SZD4 288 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 LINC00696Q6ZRV3 163 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 OR8S1Q8NH09 359 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 ADAMTS14Q8WXS8 1223 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 FAM46BQ96A09 425 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 SLAMF6Q96DU3 332 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 POTEKPQ9BYX7 375 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 FAM117AQ9C073 453 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 B3GNT4Q9C0J1 378 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 FOXJ2Q9P0K8 574 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 LOC107986453A0A1B0GWG9 222 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 GPR171O14626 319 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 TMPPEQ6ZT21 453 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 ZNF627Q7L945 461 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 ZNF227Q86WZ6 799 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 DND1Q8IYX4 353 aaKnown RBP9.92□□□□□ -0.82
TCOF1-203ENST00000394269 SLC7A6Q92536 515 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 FGGYQ96C11 551 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 SLC25A38Q96DW6 304 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 THOC3Q96J01 351 aaKnown RBP9.92□□□□□ -0.82
TCOF1-203ENST00000394269 KCNJ15Q99712 375 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 ZNF700Q9H0M5 742 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 FBXO4Q9UKT5 387 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 FLVCR2Q9UPI3 526 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 PCDHGA9Q9Y5G4 932 aaKnown RBP9.92□□□□□ -0.82
TCOF1-203ENST00000394269 TRAV18A0A075B6X5 111 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 NPIPA2E9PIF3 369 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 NPIPA3F8WFD2 350 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 KDM4BO94953 1096 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 ITGA5P08648 1049 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 SLC6A9P48067 706 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 POU3F4P49335 361 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 TRILQ7L0X0 811 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 MCHR2Q969V1 340 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 ZNF385AQ96PM9 386 aaKnown RBP9.92□□□□□ -0.82
TCOF1-203ENST00000394269 ATG5Q9H1Y0 275 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 ZNF222Q9UK12 451 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 CAMK2AQ9UQM7 478 aa9.92□□□□□ -0.82
TCOF1-203ENST00000394269 F5H5K5 113 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 ZNF254O75437 659 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 RFPL3SP0C7P2 107 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 AVPR2P30518 371 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 DLSTP36957 453 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 CLDN20P56880 219 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 Q0VFX4 171 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 BCL2A1Q16548 175 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 C1QTNF12Q5T7M4 302 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 TMEM164Q5U3C3 297 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 PEAR1Q5VY43 1037 aaPredicted RBP9.91□□□□□ -0.82
TCOF1-203ENST00000394269 TIGD3Q6B0B8 471 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 PPP1R32Q7Z5V6 425 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 TRIM63Q969Q1 353 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 ITPKCQ96DU7 683 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 RNF170Q96K19 258 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 FAM71F1Q96KD3 344 aaPredicted RBP9.91□□□□□ -0.82
TCOF1-203ENST00000394269 MNTQ99583 582 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 PAQR5Q9NXK6 330 aaPredicted RBP9.91□□□□□ -0.82
TCOF1-203ENST00000394269 LOC102723996A0A087X1L8 192 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 IGHV3-9P01782 118 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 ARSBP15848 533 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 ITGA3P26006 1051 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 LAP3P28838 519 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 EIF1P41567 113 aaKnown RBP9.91□□□□□ -0.82
TCOF1-203ENST00000394269 SLC36A2Q495M3 483 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 WIPI1Q5MNZ9 446 aaPredicted RBP9.91□□□□□ -0.82
TCOF1-203ENST00000394269 CFAP77Q6ZQR2 320 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 FCAMRQ8WWV6 532 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 ASB5Q8WWX0 329 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 ST6GAL2Q96JF0 529 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 SLX1AQ9BQ83 275 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 OR10A4Q9H209 315 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 DPAGT1Q9H3H5 408 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 PLA2G3Q9NZ20 509 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 HHLA2Q9UM44 414 aa9.91□□□□□ -0.82
TCOF1-203ENST00000394269 ZNF407Q9C0G0 2248 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms