RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 SHANK1Q9Y566 2161 aa9.04□□□□□ -0.96
VPS53-202ENST00000389040 TRBV2A0A0J9YWF9 115 aa9.04□□□□□ -0.96
VPS53-202ENST00000389040 H7C1C5 153 aa9.04□□□□□ -0.96
VPS53-202ENST00000389040 TNFSF11O14788 317 aa9.04□□□□□ -0.96
VPS53-202ENST00000389040 SSX4O60224 188 aa9.04□□□□□ -0.96
VPS53-202ENST00000389040 VAMP5O95183 116 aa9.04□□□□□ -0.96
VPS53-202ENST00000389040 RENP00797 406 aa9.04□□□□□ -0.96
VPS53-202ENST00000389040 CD1AP06126 327 aa9.04□□□□□ -0.96
VPS53-202ENST00000389040 CSF3P09919 207 aa9.04□□□□□ -0.96
VPS53-202ENST00000389040 IL11P20809 199 aa9.04□□□□□ -0.96
VPS53-202ENST00000389040 ENPP1P22413 925 aa9.04□□□□□ -0.96
VPS53-202ENST00000389040 TCEA1P23193 301 aaKnown RBP9.04□□□□□ -0.96
VPS53-202ENST00000389040 PTBP1P26599 531 aaKnown RBP eCLIP9.04□□□□□ -0.964e-7■■■■■ 29.2
VPS53-202ENST00000389040 GRPRP30550 384 aa9.04□□□□□ -0.96
VPS53-202ENST00000389040 LCN6P62502 163 aa9.04□□□□□ -0.96
VPS53-202ENST00000389040 FAM69AQ5T7M9 428 aa9.04□□□□□ -0.96
VPS53-202ENST00000389040 C1orf140Q5VVS0 124 aa9.04□□□□□ -0.96
VPS53-202ENST00000389040 SLC16A9Q7RTY1 509 aa9.04□□□□□ -0.96
VPS53-202ENST00000389040 ZNF511Q8NB15 262 aa9.04□□□□□ -0.96
VPS53-202ENST00000389040 OR13C5Q8NGS8 318 aa9.04□□□□□ -0.96
VPS53-202ENST00000389040 OR2T4Q8NH00 348 aa9.04□□□□□ -0.96
VPS53-202ENST00000389040 SLC25A36Q96CQ1 311 aa9.04□□□□□ -0.96
VPS53-202ENST00000389040 KCTD12Q96CX2 325 aaKnown RBP9.04□□□□□ -0.96
VPS53-202ENST00000389040 TRIB1Q96RU8 372 aa9.04□□□□□ -0.96
VPS53-202ENST00000389040 SOSTQ9BQB4 213 aa9.04□□□□□ -0.96
VPS53-202ENST00000389040 POM121CA8CG34 1229 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 DCTN6O00399 190 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 AHSA1O95433 338 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 EDNRAP25101 427 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 OPRM1P35372 400 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 RFX2P48378 723 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 EVX1P49640 407 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 PMPCAQ10713 525 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 ASAH1Q13510 395 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 TAB1Q15750 504 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 ZNF239Q16600 458 aaKnown RBP9.03□□□□□ -0.96
VPS53-202ENST00000389040 SFXN4Q6P4A7 337 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 P4HA3Q7Z4N8 544 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 NRARPQ7Z6K4 114 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 FJX1Q86VR8 437 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 ZNF808Q8N4W9 903 aaPredicted RBP9.03□□□□□ -0.96
VPS53-202ENST00000389040 ZNF454Q8N9F8 522 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 ITPKCQ96DU7 683 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 DNAJA3Q96EY1 480 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 GMPPAQ96IJ6 420 aaPredicted RBP9.03□□□□□ -0.96
VPS53-202ENST00000389040 TXNDC15Q96J42 360 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 SF3B5Q9BWJ5 86 aaKnown RBP9.03□□□□□ -0.96
VPS53-202ENST00000389040 SFXN3Q9BWM7 321 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 PRRG4Q9BZD6 226 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 TMEM185BQ9H7F4 350 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 SRA1Q9HD15 236 aaKnown RBP9.03□□□□□ -0.96
VPS53-202ENST00000389040 KLHL9Q9P2J3 617 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 ZNF346Q9UL40 294 aaKnown RBP9.03□□□□□ -0.96
VPS53-202ENST00000389040 B3GALT5Q9Y2C3 310 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 EML6Q6ZMW3 1958 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 TRAV1-2A0A0B4J238 106 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 A0A0G2JK05 382 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 LOC102725191A0A1B0GVB3 256 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 LIPT2A6NK58 231 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 C11orf98E9PRG8 122 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 ARHGEF9O43307 516 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 GPRIN2O60269 458 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 CYTIPO60759 359 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 GATBO75879 557 aaKnown RBP9.03□□□□□ -0.96
VPS53-202ENST00000389040 ARL6IP5O75915 188 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 SLC2A2P11168 524 aaPredicted RBP9.03□□□□□ -0.96
VPS53-202ENST00000389040 CTSSP25774 331 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 CHRNB4P30926 498 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 THBS2P35442 1172 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 PSMB10P40306 273 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 OR10A3P58181 314 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 RPS11P62280 158 aaKnown RBP eCLIP9.03□□□□□ -0.96
VPS53-202ENST00000389040 CD300CQ08708 224 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 MADCAM1Q13477 382 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 RIN1Q13671 783 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 IL18Q14116 193 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 ZNF684Q5T5D7 378 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 FAM220AQ7Z4H9 259 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 TIGD4Q8IY51 512 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 OR6V1Q8N148 313 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 SCAIQ8N9R8 606 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 ADPRHL1Q8NDY3 354 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 RNF128Q8TEB7 428 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 ZDHHC16Q969W1 377 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 CCDC120Q96HB5 630 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 ARL5BQ96KC2 179 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 SYT4Q9H2B2 425 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 PIGMQ9H3S5 423 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 PPP1R3EQ9H7J1 279 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 INIPQ9NRY2 104 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 MALT1Q9UDY8 824 aa9.03□□□□□ -0.96
VPS53-202ENST00000389040 ZNF724A8MTY0 619 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 PRR32B1ATL7 298 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 FAM25AB3EWG3 89 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 FAM25CB3EWG5 89 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 FAM25GB3EWG6 89 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 H0YC42 278 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 XKRYO14609 159 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 GPR171O14626 319 aa9.02□□□□□ -0.97
VPS53-202ENST00000389040 CXCL13O43927 109 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms