RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 MED14O60244 1454 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 TCRBV7S2A1N4TA0A589 114 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 YDJCA8MPS7 323 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 HLA-AP01891 365 aaKnown RBP4.28□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF888P0CJ79 500 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF26P17031 533 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-202ENST00000375405 ARR3P36575 388 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 ZXDAP98168 799 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 SLC17A1Q14916 467 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 PRICKLE4Q2TBC4 344 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 TMEM249Q2WGJ8 235 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 EBLN2Q6P2I7 272 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 TMEFF1Q8IYR6 380 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF683Q8IZ20 524 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 GPX8Q8TED1 209 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 FAM210BQ96KR6 192 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 GPR82Q96P67 336 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 FBXO8Q9NRD0 319 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 TMEM59LQ9UK28 342 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 PITPNC1Q9UKF7 332 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 SPATA31A7Q8IWB4 1347 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 SPHKAPQ2M3C7 1700 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 FAM237AA0A1B0GTK4 181 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 A0A1W2PRX2 142 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 ZFAND5O76080 213 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 CLEC2LP0C7M8 214 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 MYOGP15173 224 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 NFYAP23511 347 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-202ENST00000375405 MFGE8Q08431 387 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-202ENST00000375405 CDC20Q12834 499 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 NFATC3Q12968 1075 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 LAPTM4AQ15012 233 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 ARL13AQ5H913 290 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-202ENST00000375405 DOLPP1Q86YN1 238 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 GALNT16Q8N428 558 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 SIRT6Q8N6T7 355 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 OR8J2Q8NGG1 315 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 MRAPQ8TCY5 172 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 LRRC15Q8TF66 581 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 Q8WTZ3 238 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 TMEM37Q8WXS4 190 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 RAB1CQ92928 201 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 SYT11Q9BT88 431 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 ABHD6Q9BV23 337 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 GPR87Q9BY21 358 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 ESRP2Q9H6T0 727 aaKnown RBP4.28□□□□□ -1.72
SCN1A-202ENST00000375405 C1orf123Q9NWV4 160 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 PKDREJQ9NTG1 2253 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 MEIKINA0A087WXM9 373 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 UPK3BL1B0FP48 263 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 UPK3BL2E5RIL1 263 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 NPIPB6E9PJ23 425 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 APOC4-APOC2K7ER74 178 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 FGF18O76093 207 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 CRYAAP02489 173 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 APOC2P02655 101 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 PGA4P0DJD7 388 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 PGA3P0DJD8 388 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 PGA5P0DJD9 388 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 BTF3P20290 206 aaKnown RBP4.27□□□□□ -1.73
SCN1A-202ENST00000375405 TDGF1P3P51864 188 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 RAG2P55895 527 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 SRSF5Q13243 272 aaKnown RBP4.27□□□□□ -1.73
SCN1A-202ENST00000375405 ETFDHQ16134 617 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 GPRIN1Q7Z2K8 1008 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 LHFPL4Q7Z7J7 247 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 ZNF440Q8IYI8 595 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 FAM89BQ8N5H3 189 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 C12orf76Q8N812 135 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-202ENST00000375405 OR10V1Q8NGI7 309 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 OR1B1Q8NGR6 318 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 OR2K2Q8NGT1 345 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 OR6K3Q8NGY3 331 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 ISCA1Q9BUE6 129 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 SLC25A18Q9H1K4 315 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 OR52D1Q9H346 318 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 MYO3AQ8NEV4 1616 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 A6NDN8 102 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 VNN1O95497 513 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 OAS1P00973 400 aaKnown RBP4.27□□□□□ -1.73
SCN1A-202ENST00000375405 FCGR3AP08637 254 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 NME2P22392 152 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 NPBWR2P48146 333 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 NPY4RP50391 375 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 TPMTP51580 245 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 LYZP61626 148 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 OR2F1Q13607 317 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 GSG1Q2KHT4 349 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 FAM53AQ6NSI3 398 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-202ENST00000375405 SPRED1Q7Z699 444 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 ANKRD52Q8NB46 1076 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 OR2G3Q8NGZ4 309 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 STON2Q8WXE9 905 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 DIRC2Q96SL1 478 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 TREM2Q9NZC2 230 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 LIPGQ9Y5X9 500 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 CEP152O94986 1710 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 A6NIZ1 184 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 NDUFB3O43676 98 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms