RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 FAM25CB3EWG5 89 aa8.11□□□□□ -1.11
UPF2-202ENST00000357604 FAM25GB3EWG6 89 aa8.11□□□□□ -1.11
UPF2-202ENST00000357604 SEC14L2O76054 403 aa8.11□□□□□ -1.11
UPF2-202ENST00000357604 FAM157BP0CG42 384 aa8.11□□□□□ -1.11
UPF2-202ENST00000357604 OR12D2P58182 307 aa8.11□□□□□ -1.11
UPF2-202ENST00000357604 HIKESHIQ53FT3 197 aa8.11□□□□□ -1.11
UPF2-202ENST00000357604 TSPO2Q5TGU0 170 aa8.11□□□□□ -1.11
UPF2-202ENST00000357604 GGNQ86UU5 652 aa8.11□□□□□ -1.11
UPF2-202ENST00000357604 GPR148Q8TDV2 347 aa8.11□□□□□ -1.11
UPF2-202ENST00000357604 REEP6Q96HR9 211 aa8.11□□□□□ -1.11
UPF2-202ENST00000357604 NIPSNAP1Q9BPW8 284 aa8.11□□□□□ -1.11
UPF2-202ENST00000357604 C20orf141Q9NUB4 165 aa8.11□□□□□ -1.11
UPF2-202ENST00000357604 POLDIP2Q9Y2S7 368 aa8.11□□□□□ -1.11
UPF2-202ENST00000357604 PI4KAP42356 2102 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 TRAPPC2LH3BP13 241 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 SCGNO76038 276 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 SNAP29O95721 258 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 ALPLP05186 524 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 ACHEP22303 614 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 APOBEC3AP31941 199 aaPredicted RBP8.1□□□□□ -1.11
UPF2-202ENST00000357604 ZNF691Q5VV52 312 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 OR6V1Q8N148 313 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 ZNF433Q8N7K0 673 aaPredicted RBP8.1□□□□□ -1.11
UPF2-202ENST00000357604 PIGCQ92535 297 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 CISD1Q9NZ45 108 aaKnown RBP8.1□□□□□ -1.11
UPF2-202ENST00000357604 CRNNQ9UBG3 495 aaPredicted RBP8.1□□□□□ -1.11
UPF2-202ENST00000357604 OR52A1Q9UKL2 312 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 ITGB1BP2Q9UKP3 347 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 ZNF835Q9Y2P0 537 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 CLPTM1O96005 669 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 PLA2G2AP14555 144 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 CXCR4P61073 352 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 TLE4Q04727 773 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 OR13G1Q8NGZ3 307 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 LINC01560Q8TB33 94 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 FAM71F1Q96KD3 344 aaPredicted RBP8.1□□□□□ -1.11
UPF2-202ENST00000357604 FOXN4Q96NZ1 517 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 RHNO1Q9BSD3 238 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 GMPR2Q9P2T1 348 aaKnown RBP8.1□□□□□ -1.11
UPF2-202ENST00000357604 ETV2O00321 342 aaPredicted RBP8.1□□□□□ -1.11
UPF2-202ENST00000357604 ENTPD6O75354 484 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 TGM6O95932 706 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 ZNF32P17041 273 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 IL11P20809 199 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 GADD45AP24522 165 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 C3orf36Q3SXR2 165 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 DEGS2Q6QHC5 323 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 LHFPL2Q6ZUX7 228 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 OR51L1Q8NGJ5 315 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 ZNF519Q8TB69 540 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 C15orf40Q8WUR7 153 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 NEU4Q8WWR8 484 aaPredicted RBP8.1□□□□□ -1.11
UPF2-202ENST00000357604 ZNF385AQ96PM9 386 aaKnown RBP8.1□□□□□ -1.11
UPF2-202ENST00000357604 DHRS9Q9BPW9 319 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 R4GMQ9 66 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 RPL36A-HNRNPH2H7BZ11 118 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 SNRPNP63162 240 aaKnown RBP8.1□□□□□ -1.11
UPF2-202ENST00000357604 FAM27BQ5VT28 67 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 TXNDC15Q96J42 360 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 PRSS27Q9BQR3 290 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 MARCH7Q9H992 704 aa8.1□□□□□ -1.11
UPF2-202ENST00000357604 ZAR1LA6NP61 321 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 LRRN3E7EW58 273 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 TUBA1BP68363 451 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 TUBA4AP68366 448 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 NEDD8Q15843 81 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 SOWAHCQ53LP3 525 aaPredicted RBP8.09□□□□□ -1.11
UPF2-202ENST00000357604 TUBA1AQ71U36 451 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 MUC20Q8N307 709 aaPredicted RBP8.09□□□□□ -1.11
UPF2-202ENST00000357604 OR4D11Q8NGI4 311 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 MARVELD3Q96A59 401 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 CXXC4Q9H2H0 198 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 ING4Q9UNL4 249 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 LRRC42Q9Y546 428 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 MS4A18H0YCH9 400 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 SEMG1P04279 462 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 MYF6P23409 242 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 CDAP32320 146 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 ARL6IP1Q15041 203 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 MS4A18Q3C1V0 323 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 SLC25A47Q6Q0C1 308 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 LINC00114Q6XXX2 140 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 MEPEQ9NQ76 525 aaPredicted RBP8.09□□□□□ -1.11
UPF2-202ENST00000357604 ZDHHC8Q9ULC8 765 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 GPRIN2O60269 458 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 NTN1O95631 604 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 GYPBP06028 91 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 PSMB1P20618 241 aaKnown RBP8.09□□□□□ -1.11
UPF2-202ENST00000357604 ST3GAL4Q11206 333 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 MAD2L1BPQ15013 274 aaPredicted RBP8.09□□□□□ -1.11
UPF2-202ENST00000357604 TAS2R5Q9NYW4 299 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 METTL21EPA6NDL7 271 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 SELENOFO60613 162 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 IST1P53990 364 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 TNFAIP6P98066 277 aaPredicted RBP8.09□□□□□ -1.11
UPF2-202ENST00000357604 CDK5Q00535 292 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 FXNQ16595 210 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 MESTQ5EB52 335 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 RNFT1Q5M7Z0 435 aa8.09□□□□□ -1.11
UPF2-202ENST00000357604 CLVS2Q5SYC1 327 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms