RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 EMDP50402 254 aa7.52□□□□□ -1.2
HMGB1-203ENST00000341423 ECSCRQ19T08 205 aa7.52□□□□□ -1.2
HMGB1-203ENST00000341423 LCN8Q6JVE9 175 aa7.52□□□□□ -1.2
HMGB1-203ENST00000341423 MRAPQ8TCY5 172 aa7.52□□□□□ -1.2
HMGB1-203ENST00000341423 SCGB1C1Q8TD33 95 aa7.52□□□□□ -1.2
HMGB1-203ENST00000341423 METTL8Q9H825 291 aaKnown RBP7.52□□□□□ -1.2
HMGB1-203ENST00000341423 GAR1Q9NY12 217 aaKnown RBP7.52□□□□□ -1.2
HMGB1-203ENST00000341423 POLR2AP24928 1970 aaKnown RBP7.52□□□□□ -1.21
HMGB1-203ENST00000341423 ABCA12Q86UK0 2595 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 M0R135 149 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 PSMA1P25786 263 aaKnown RBP7.52□□□□□ -1.21
HMGB1-203ENST00000341423 PRSS12P56730 875 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 ADPRMQ3LIE5 342 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 ZNF362Q5T0B9 420 aaPredicted RBP7.52□□□□□ -1.21
HMGB1-203ENST00000341423 LRRN1Q6UXK5 716 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 NHLRC1Q6VVB1 395 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 Q8IYB0 196 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 ZNF799Q96GE5 643 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 TOR3AQ9H497 397 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 ETAA1Q9NY74 926 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 RIMS3Q9UJD0 308 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 DDX60Q8IY21 1712 aaKnown RBP7.52□□□□□ -1.21
HMGB1-203ENST00000341423 MARF1Q9Y4F3 1742 aaKnown RBP7.52□□□□□ -1.21
HMGB1-203ENST00000341423 GPR39O43194 453 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 PPP1R3DO95685 299 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 B3GALT4O96024 378 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 GUSBP08236 651 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 MRPL3P09001 348 aaKnown RBP7.52□□□□□ -1.21
HMGB1-203ENST00000341423 THRBP10828 461 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 STOMP27105 288 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 CA5AP35218 305 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 LOXL3P58215 753 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 TAB1Q15750 504 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 NTRK2Q16620 822 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 STUMQ69YW2 141 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 SFRP4Q6FHJ7 346 aaPredicted RBP7.52□□□□□ -1.21
HMGB1-203ENST00000341423 SLC35G3Q8N808 338 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 TRUB1Q8WWH5 349 aaKnown RBP7.52□□□□□ -1.21
HMGB1-203ENST00000341423 BPIFA2Q96DR5 249 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 SORCS2Q96PQ0 1159 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 TSNAXQ99598 290 aaKnown RBP7.52□□□□□ -1.21
HMGB1-203ENST00000341423 ALG12Q9BV10 488 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 GSTO2Q9H4Y5 243 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 DNAJB9Q9UBS3 223 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 TTC3P53804 2025 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 ATP6V1G2-DDX39BF2Z307 99 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 HS3ST1O14792 307 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 TOX4O94842 621 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 THBDP07204 575 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 GIFP27352 417 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 MDH2P40926 338 aaKnown RBP7.52□□□□□ -1.21
HMGB1-203ENST00000341423 PRTGQ2VWP7 1150 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 RSBN1Q5VWQ0 802 aaPredicted RBP7.52□□□□□ -1.21
HMGB1-203ENST00000341423 RTL6Q6ICC9 239 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 PIP4P1Q86T03 277 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 OR52M1Q8NGK5 317 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 ZNF75CPQ92670 426 aaPredicted RBP7.52□□□□□ -1.21
HMGB1-203ENST00000341423 C11orf24Q96F05 449 aaPredicted RBP7.52□□□□□ -1.21
HMGB1-203ENST00000341423 MMP26Q9NRE1 261 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 KCNG2Q9UJ96 466 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 INSIG2Q9Y5U4 225 aa7.52□□□□□ -1.21
HMGB1-203ENST00000341423 IL18BPO95998 194 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 ARG1P05089 322 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 GALNSP34059 522 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 CLDN8P56748 225 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 ERHP84090 104 aaKnown RBP7.51□□□□□ -1.21
HMGB1-203ENST00000341423 LIPKQ5VXJ0 399 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 RFLNBQ8N5W9 214 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 TTTY10Q9BZA0 68 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 ARID1BQ8NFD5 2236 aaPredicted RBP7.51□□□□□ -1.21
HMGB1-203ENST00000341423 A0A0B4J293 547 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 MED26O95402 600 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 SOX14O95416 240 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 TFPTP0C1Z6 253 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 SHBQ15464 509 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 GRK1Q15835 563 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 TIMM23BQ5SRD1 257 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 OR2T2Q6IF00 324 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 TMEM150AQ86TG1 271 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 SGMS2Q8NHU3 365 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 FLYWCH2Q96CP2 140 aaKnown RBP7.51□□□□□ -1.21
HMGB1-203ENST00000341423 RCN3Q96D15 328 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 TUBA1CQ9BQE3 449 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 SLC25A19Q9HC21 320 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 EXOSC1Q9Y3B2 195 aaKnown RBP7.51□□□□□ -1.21
HMGB1-203ENST00000341423 ARID1AO14497 2285 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 CD300LBA8K4G0 201 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 TXNL1O43396 289 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 ARSBP15848 533 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 OR1Q1Q15612 314 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 MFSD12Q6NUT3 480 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 SLC22A18ASQ8N1D0 253 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 KDM8Q8N371 416 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 AQP11Q8NBQ7 271 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 ZNF285Q96NJ3 590 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 MND1Q9BWT6 205 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 JAM3Q9BX67 310 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 LRRC42Q9Y546 428 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 K7EQM0 130 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 TPPPO94811 219 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms