RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 DNAJC13O75165 2243 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 A0A087WV48 116 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 A0A1B0GTH9 108 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 GPR171O14626 319 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 SYNGR4O95473 234 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 PNPP00491 289 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 BMP4P12644 408 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 KIR3DL2P43630 455 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 CTAG1AP78358 180 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 WDR38Q5JTN6 314 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 OR7E24Q6IFN5 339 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 TPRA1Q86W33 373 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 ZADH2Q8N4Q0 377 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 OR10S1Q8NGN2 331 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 NABP1Q96AH0 204 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 WDR12Q9GZL7 423 aaKnown RBP13.67□□□□□ -0.22
LIMS1-202ENST00000338045 NELFAQ9H3P2 528 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 RNF122Q9H9V4 155 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 SMURF1Q9HCE7 757 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 GDF2Q9UK05 429 aaPredicted RBP13.67□□□□□ -0.22
LIMS1-202ENST00000338045 SPTBN2O15020 2390 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 FRYQ5TBA9 3013 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 TRAV1-2A0A0B4J238 106 aa13.66□□□□□ -0.22
LIMS1-202ENST00000338045 TRBV5-5A0A0J9YX44 114 aa13.66□□□□□ -0.22
LIMS1-202ENST00000338045 TFECO14948 347 aaPredicted RBP13.66□□□□□ -0.22
LIMS1-202ENST00000338045 ARL6IP5O75915 188 aa13.66□□□□□ -0.22
LIMS1-202ENST00000338045 DCTDP32321 178 aa13.66□□□□□ -0.22
LIMS1-202ENST00000338045 ZNF846Q147U1 533 aa13.66□□□□□ -0.22
LIMS1-202ENST00000338045 RIPPLY2Q5TAB7 128 aa13.66□□□□□ -0.22
LIMS1-202ENST00000338045 SPATC1Q76KD6 591 aa13.66□□□□□ -0.22
LIMS1-202ENST00000338045 IL17RDQ8NFM7 739 aa13.66□□□□□ -0.22
LIMS1-202ENST00000338045 FNDC9Q8TBE3 224 aa13.66□□□□□ -0.22
LIMS1-202ENST00000338045 BORCS5Q969J3 196 aa13.66□□□□□ -0.22
LIMS1-202ENST00000338045 SLAMF6Q96DU3 332 aa13.66□□□□□ -0.22
LIMS1-202ENST00000338045 OR14A2Q96R54 314 aa13.66□□□□□ -0.22
LIMS1-202ENST00000338045 KCNS3Q9BQ31 491 aa13.66□□□□□ -0.22
LIMS1-202ENST00000338045 BCO1Q9HAY6 547 aa13.66□□□□□ -0.22
LIMS1-202ENST00000338045 R4GMQ9 66 aa13.66□□□□□ -0.22
LIMS1-202ENST00000338045 ARPC4-TTLL3A0A0A6YYG9 625 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 A0A1B0GVC2 190 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 ZNF879B4DU55 563 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 MSR1P21757 451 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 MYL9P24844 172 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 HOXD11P31277 338 aaPredicted RBP13.65□□□□□ -0.22
LIMS1-202ENST00000338045 S100A5P33763 92 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 CFAP77Q6ZQR2 320 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 NR2C2APQ86WQ0 139 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 CATSPERDQ86XM0 798 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 SPACA3Q8IXA5 215 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 COMMD4Q9H0A8 199 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 EXO5Q9H790 373 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 DKK4Q9UBT3 224 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 FBXL3Q9UKT7 428 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 POLR1DQ9Y2S0 133 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 A0A1B0GVG6 124 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 ZNF724A8MTY0 619 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 CTDSP2O14595 271 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 PIN1P1O15428 100 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 ETV6P41212 452 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 GUCA1AP43080 201 aaPredicted RBP13.65□□□□□ -0.22
LIMS1-202ENST00000338045 MMP16P51512 607 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 ZNF84P51523 738 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 CAV3P56539 151 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 MRPS34P82930 218 aaKnown RBP13.65□□□□□ -0.22
LIMS1-202ENST00000338045 MFGE8Q08431 387 aaPredicted RBP13.65□□□□□ -0.22
LIMS1-202ENST00000338045 ENDOGQ14249 297 aaKnown RBP13.65□□□□□ -0.22
LIMS1-202ENST00000338045 ZNF169Q14929 603 aaPredicted RBP13.65□□□□□ -0.22
LIMS1-202ENST00000338045 C3AR1Q16581 482 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 ZNF544Q6NX49 715 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 OR2AJ1Q8NGZ0 328 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 AP3S1Q92572 193 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 HTRA1Q92743 480 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 ZNF837Q96EG3 531 aaPredicted RBP13.65□□□□□ -0.22
LIMS1-202ENST00000338045 DERL3Q96Q80 235 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 ZNF416Q9BWM5 594 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 RBM24Q9BX46 236 aaKnown RBP13.65□□□□□ -0.22
LIMS1-202ENST00000338045 PNRC2Q9NPJ4 139 aaKnown RBP13.65□□□□□ -0.22
LIMS1-202ENST00000338045 EMC3Q9P0I2 261 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 ASH2LQ9UBL3 628 aa13.65□□□□□ -0.22
LIMS1-202ENST00000338045 PHF3Q92576 2039 aaKnown RBP13.65□□□□□ -0.23
LIMS1-202ENST00000338045 SMIM30A4D0T7 59 aa13.64□□□□□ -0.23
LIMS1-202ENST00000338045 ZNF878C9JN71 531 aa13.64□□□□□ -0.23
LIMS1-202ENST00000338045 H2BFMP0C1H6 154 aa13.64□□□□□ -0.23
LIMS1-202ENST00000338045 CFL1P23528 166 aaKnown RBP13.64□□□□□ -0.23
LIMS1-202ENST00000338045 RNPS1Q15287 305 aaKnown RBP13.64□□□□□ -0.23
LIMS1-202ENST00000338045 Q499Y3 187 aa13.64□□□□□ -0.23
LIMS1-202ENST00000338045 Q6ZS92 163 aa13.64□□□□□ -0.23
LIMS1-202ENST00000338045 ZNF676Q8N7Q3 588 aa13.64□□□□□ -0.23
LIMS1-202ENST00000338045 CPT1CQ8TCG5 803 aa13.64□□□□□ -0.23
LIMS1-202ENST00000338045 WDFY2Q96P53 400 aa13.64□□□□□ -0.23
LIMS1-202ENST00000338045 LINC00470Q9BZP3 86 aa13.64□□□□□ -0.23
LIMS1-202ENST00000338045 PRDM14Q9GZV8 571 aa13.64□□□□□ -0.23
LIMS1-202ENST00000338045 PALMDQ9NP74 551 aa13.64□□□□□ -0.23
LIMS1-202ENST00000338045 PLSCR2Q9NRY7 297 aa13.64□□□□□ -0.23
LIMS1-202ENST00000338045 CENPMQ9NSP4 180 aa13.64□□□□□ -0.23
LIMS1-202ENST00000338045 NOSIPQ9Y314 301 aaKnown RBP13.64□□□□□ -0.23
LIMS1-202ENST00000338045 TNRC6AQ8NDV7 1962 aaKnown RBP13.63□□□□□ -0.23
LIMS1-202ENST00000338045 A0A0G2JK05 382 aa13.63□□□□□ -0.23
LIMS1-202ENST00000338045 FAM25EA8MYX2 175 aa13.63□□□□□ -0.23
LIMS1-202ENST00000338045 J3QRK9 145 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms