RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 CCSO14618 274 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 IL9P15248 144 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 DHRS13Q6UX07 377 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 WFDC8Q8IUA0 241 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 CMIPQ8IY22 773 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 ZNF454Q8N9F8 522 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 NMNAT2Q9BZQ4 307 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 ASIC5Q9NY37 505 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 KCNG2Q9UJ96 466 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 TRBV5-4A0A0C4DH59 114 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 LOC100289279A0A1B0GTE1 492 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 P2RX6O15547 441 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 GPANK1O95872 356 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 RBMS2Q15434 407 aaKnown RBP9.27□□□□□ -0.93
CHD3-201ENST00000330494 STEAP1BQ6NZ63 245 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 OR13F1Q8NGS4 319 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 QSER1Q2KHR3 1735 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 METTL12A8MUP2 240 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 H0YIG0 161 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 FADS1O60427 444 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 OR2B11Q5JQS5 317 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 USP51Q70EK9 711 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 SEMA6DQ8NFY4 1073 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 RBPMSQ93062 196 aaKnown RBP9.27□□□□□ -0.93
CHD3-201ENST00000330494 OR2A25A4D2G3 310 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 MT-ATP6P00846 226 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 UBBP0CG47 229 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 YIF1BQ5BJH7 314 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 UBALD2Q8IYN6 164 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 SPEM1Q8N4L4 309 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 TP53I13Q8NBR0 393 aaPredicted RBP9.27□□□□□ -0.93
CHD3-201ENST00000330494 SLAMF6Q96DU3 332 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 SEC22CQ9BRL7 303 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 USP54Q70EL1 1684 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 IGHV5-51A0A0C4DH38 117 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 EIF4E2O60573 245 aaKnown RBP9.27□□□□□ -0.93
CHD3-201ENST00000330494 PRAF2O60831 178 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 PAPLNO95428 1278 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 EPHA2P29317 976 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 MTNR1BP49286 362 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 EMP3P54852 163 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 MRPS10P82664 201 aaKnown RBP9.27□□□□□ -0.93
CHD3-201ENST00000330494 CLINT1Q14677 625 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 SPATA46Q5T0L3 261 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 BHLHA9Q7RTU4 235 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 HPSE2Q8WWQ2 592 aa9.27□□□□□ -0.93
CHD3-201ENST00000330494 SPTY2D1-AS1A0A0U1RR47 76 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 KRBOX1C9JBD0 128 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 D6RAR5 112 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 CLDN1O95832 211 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 THBS1P07996 1170 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 SBK2P0C263 348 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 MRPS34P82930 218 aaKnown RBP9.26□□□□□ -0.93
CHD3-201ENST00000330494 C9orf152Q5JTZ5 239 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 NANOGP1Q8N7R0 232 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 MSI2Q96DH6 328 aaKnown RBP9.26□□□□□ -0.93
CHD3-201ENST00000330494 RHNO1Q9BSD3 238 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 C11orf54Q9H0W9 315 aaPredicted RBP9.26□□□□□ -0.93
CHD3-201ENST00000330494 TSPAN12O95859 305 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 SPI1P17947 270 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 SDHAP31040 664 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 RPS27AP62979 156 aaKnown RBP9.26□□□□□ -0.93
CHD3-201ENST00000330494 UBA52P62987 128 aaKnown RBP9.26□□□□□ -0.93
CHD3-201ENST00000330494 FAAP20Q6NZ36 180 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 OR4A16Q8NH70 328 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 POMT2Q9UKY4 750 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 KLK10O43240 276 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 WNT11O96014 354 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 FOLR1P15328 257 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 CLDN15P56746 228 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 GNB1P62873 340 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 GRB2P62993 217 aaKnown RBP9.26□□□□□ -0.93
CHD3-201ENST00000330494 CAMK2BQ13554 666 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 SLC22A25Q6T423 547 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 PPP1R3CQ9UQK1 317 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 MSTNO14793 375 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 PIAS2O75928 621 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 ZNF620Q6ZNG0 422 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 KCNG3Q8TAE7 436 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 KLK8O60259 260 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 ZNF728P0DKX0 622 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 ETFRF1Q6IPR1 90 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 ZNF574Q6ZN55 896 aaPredicted RBP9.26□□□□□ -0.93
CHD3-201ENST00000330494 NAXDQ8IW45 347 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 DEFB124Q8NES8 71 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 PARP12Q9H0J9 701 aaKnown RBP9.26□□□□□ -0.93
CHD3-201ENST00000330494 C20orf85Q9H1P6 137 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 ZNF230Q9UIE0 474 aaPredicted RBP9.26□□□□□ -0.93
CHD3-201ENST00000330494 SLC22A13Q9Y226 551 aa9.26□□□□□ -0.93
CHD3-201ENST00000330494 A0A0A6YYD5 115 aa9.25□□□□□ -0.93
CHD3-201ENST00000330494 OR6C76A6NM76 312 aa9.25□□□□□ -0.93
CHD3-201ENST00000330494 SOD1P00441 154 aa9.25□□□□□ -0.93
CHD3-201ENST00000330494 PNPP00491 289 aa9.25□□□□□ -0.93
CHD3-201ENST00000330494 NME2P22392 152 aa9.25□□□□□ -0.93
CHD3-201ENST00000330494 BAXQ07812 192 aa9.25□□□□□ -0.93
CHD3-201ENST00000330494 DMWDQ09019 674 aa9.25□□□□□ -0.93
CHD3-201ENST00000330494 PRSS36Q5K4E3 855 aa9.25□□□□□ -0.93
CHD3-201ENST00000330494 LACC1Q8IV20 430 aa9.25□□□□□ -0.93
CHD3-201ENST00000330494 OR52N5Q8NH56 324 aa9.25□□□□□ -0.93
CHD3-201ENST00000330494 PUS1Q9Y606 427 aaKnown RBP eCLIP9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms