RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 ZNF280AP59817 542 aaPredicted RBP13.14□□□□□ -0.31
COL7A1-201ENST00000328333 SAXO2Q658L1 398 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 WWTR1Q9GZV5 400 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 TRAV1-2A0A0B4J238 106 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 A0A1W2PP55 124 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 A0A1W2PQU0 124 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 KDM4EB2RXH2 506 aaPredicted RBP13.14□□□□□ -0.31
COL7A1-201ENST00000328333 ABCD4O14678 606 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 ARHGEF39Q8N4T4 335 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 FAM26EQ8N5C1 309 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 ADOQ96SZ5 270 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 C1QTNF3Q9BXJ4 246 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 NAA50Q9GZZ1 169 aaKnown RBP13.14□□□□□ -0.31
COL7A1-201ENST00000328333 C5AR2Q9P296 337 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 ROS1P08922 2347 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 B4DEV8 164 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 GSTP1P09211 210 aaKnown RBP13.14□□□□□ -0.31
COL7A1-201ENST00000328333 VRK3Q8IV63 474 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 IGSF8Q969P0 613 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 NXT1Q9UKK6 140 aaKnown RBP13.14□□□□□ -0.31
COL7A1-201ENST00000328333 RAB27BO00194 218 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 FGF18O76093 207 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 G0S2P27469 103 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 CD68P34810 354 aaPredicted RBP13.14□□□□□ -0.31
COL7A1-201ENST00000328333 EVX1P49640 407 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 TPBGQ13641 420 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 CEBPEQ15744 281 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 CGB2Q6NT52 195 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 AMIGO3Q86WK7 504 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 PIGCQ92535 297 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 NXF5Q9H1B4 397 aaKnown RBP13.14□□□□□ -0.31
COL7A1-201ENST00000328333 IL17CQ9P0M4 197 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 HSFX1Q9UBD0 423 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 PRICKLE3O43900 615 aaPredicted RBP13.13□□□□□ -0.31
COL7A1-201ENST00000328333 B3GNT9Q6UX72 402 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 NAT6Q93015 286 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 CCDC74AQ96AQ1 378 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 WDR83Q9BRX9 315 aaKnown RBP13.13□□□□□ -0.31
COL7A1-201ENST00000328333 SIGLEC6O43699 453 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 MRPL33O75394 65 aaKnown RBP13.13□□□□□ -0.31
COL7A1-201ENST00000328333 HSBP1O75506 76 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 SOD1P00441 154 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 FOXA1P55317 472 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 P2RX3P56373 397 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 PRR22Q8IZ63 422 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 SYS1Q8N2H4 156 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 RPH3ALQ9UNE2 315 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 DOCK1Q14185 1865 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 OR6C76A6NM76 312 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 GZMKP49863 264 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 Q3ZCU0 254 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 RAB6CQ53S08 254 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 LSRQ86X29 649 aaPredicted RBP13.13□□□□□ -0.31
COL7A1-201ENST00000328333 MFSD9Q8NBP5 474 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 TMED6Q8WW62 240 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 GTF3C1Q12789 2109 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 TCRBV21S2A2A0A5A6 115 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 DEDDO75618 318 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 YOD1Q5VVQ6 348 aaPredicted RBP13.13□□□□□ -0.31
COL7A1-201ENST00000328333 DHRS11Q6UWP2 260 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 TMEM184AQ6ZMB5 413 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 ZNF765Q7L2R6 523 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 OR2A1Q8NGT9 310 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 EPHX3Q9H6B9 360 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 AKIP1Q9NQ31 210 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 LIPAP38571 399 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 SCAND1P57086 179 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 C17orf67Q0P5P2 114 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 FABP9Q0Z7S8 132 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 MARCH8Q5T0T0 291 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 TRNP1Q6NT89 227 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 PRSS42Q7Z5A4 293 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 PRAMEF26H0Y7S4 382 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 KRTDAPP60985 99 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 RELL2Q8NC24 303 aaPredicted RBP13.13□□□□□ -0.31
COL7A1-201ENST00000328333 POLDIP2Q9Y2S7 368 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 A6NIN4 97 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 SERPINE3A8MV23 424 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 FURINP09958 794 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 SMIM18P0DKX4 95 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 GPX2P18283 190 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 MCATQ8IVS2 390 aaKnown RBP13.13□□□□□ -0.31
COL7A1-201ENST00000328333 ARRDC1Q8N5I2 433 aa13.13□□□□□ -0.31
COL7A1-201ENST00000328333 PATJQ8NI35 1801 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 BCORQ6W2J9 1755 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 OR8G3PP0DMU2 310 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 SPICQ8N5J4 248 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 OR13C5Q8NGS8 318 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 SOCS6O14544 535 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 CNN1P51911 297 aaKnown RBP13.12□□□□□ -0.31
COL7A1-201ENST00000328333 UBE2IP63279 158 aaKnown RBP13.12□□□□□ -0.31
COL7A1-201ENST00000328333 TMEM88Q6PEY1 159 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 SLC38A9Q8NBW4 561 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 GABRQQ9UN88 632 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 A6NCN8 305 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 VAMP5O95183 116 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 IL5P05113 134 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 SHHQ15465 462 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 TMEM128Q5BJH2 165 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 HMGN2P46Q86SG4 172 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms