RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 SUMO3P55854 103 aaPredicted RBP7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 ZXDAP98168 799 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 SOX4Q06945 474 aaPredicted RBP7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 ELAVL3Q14576 367 aaKnown RBP7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 OR14C36Q8NHC7 312 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 RGP1Q92546 391 aaPredicted RBP7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 SYT11Q9BT88 431 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 NAA50Q9GZZ1 169 aaKnown RBP7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 DNMT3BQ9UBC3 853 aaKnown RBP7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 PPM1HQ9ULR3 514 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 HPSEQ9Y251 543 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 ANKRD26Q9UPS8 1709 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 LACTBL1A8MY62 500 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 CHADO15335 359 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 CACNG3O60359 315 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 CD74P04233 296 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 DAOAP59103 153 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 MOGAT3Q86VF5 341 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 GLB1L3Q8NCI6 653 aaPredicted RBP7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 OR9A1PQ8NGU1 263 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 SETD7Q8WTS6 366 aaKnown RBP7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 KLK6Q92876 244 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 CHST6Q9GZX3 395 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 PALLDQ8WX93 1383 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 ARRDC5A6NEK1 342 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 E5RGE8 158 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 BGLAPP02818 100 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 SLC35E2BP0CK96 405 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 CD37P11049 281 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 SRP14P37108 136 aaKnown RBP7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 PROX2Q3B8N5 592 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 TMEM155Q4W5P6 130 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 ADGRE4PQ86SQ3 457 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 CA13Q8N1Q1 262 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 OR1L6Q8NGR2 347 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 RNASEH2CQ8TDP1 164 aaKnown RBP7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 TFAP2BQ92481 460 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 SPOCK2Q92563 424 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 FDXACB1Q9BRP7 624 aaPredicted RBP7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 HDHD3Q9BSH5 251 aaPredicted RBP7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 EGLN3Q9H6Z9 239 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 AGO3Q9H9G7 860 aaKnown RBP7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 NSG2Q9Y328 171 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 CNTNAP5Q8WYK1 1306 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 ABCC3O15438 1527 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 TNFRSF10CO14798 259 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 HCRTR1O43613 425 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 NDUFC2O95298 119 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 SERTAD2Q14140 314 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 OR1N1Q8NGS0 311 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 SLC39A7Q92504 469 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 SCMH1Q96GD3 660 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 FYTTD1Q96QD9 318 aaKnown RBP7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 KCNMB2Q9Y691 235 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 VWDEQ8N2E2 1590 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 PREX1Q8TCU6 1659 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 ANKARQ7Z5J8 1434 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 A0A0G2JLW4 131 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 C17orf102A2RUQ5 167 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 LRRC30A6NM36 301 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 CLDN5O00501 218 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 AMHP03971 560 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 GBAP04062 536 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 FGF4P08620 206 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 ETV6P41212 452 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 MS4A2Q01362 244 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 NNATQ16517 81 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 MSS51Q4VC12 460 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 NSUN5P2Q63ZY6 315 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 SLC35B2Q8TB61 432 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 TRMT61AQ96FX7 289 aaKnown RBP7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 ZNF778Q96MU6 729 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 MUS81Q96NY9 551 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 PEBP4Q96S96 227 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 CDCA3Q99618 268 aaPredicted RBP7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 IL12RB2Q99665 862 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 MCHR1Q99705 422 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 GLIS2Q9BZE0 524 aaPredicted RBP7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 GSX2Q9BZM3 304 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 AAMDCQ9H7C9 122 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 PARP11Q9NR21 331 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 GLRX2Q9NS18 164 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 IER3IP1Q9Y5U9 82 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 RFX7Q2KHR2 1363 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 IGKV3D-15A0A087WSY6 115 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 TRBV23-1A0A0A0MS06 115 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 UBE2Q2LH0YL09 131 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 PRRG2O14669 202 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 RBFOX2O43251 390 aaKnown RBP eCLIP7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 PRKRAO75569 313 aaKnown RBP7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 IGKV3-15P01624 115 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 VTNP04004 478 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 CHRM4P08173 479 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 CYC1P08574 325 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 ADRA1BP35368 520 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 CDC42EP1Q00587 391 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 GPR17Q13304 367 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 SPHARQ15513 63 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 ZFAND6Q6FIF0 208 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 CCDC190Q86UF4 302 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms