RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 TMEM123Q8N131 208 aa14.59□□□□□ -0.07
USP4-201ENST00000265560 ABTB1Q969K4 478 aaPredicted RBP14.59□□□□□ -0.07
USP4-201ENST00000265560 C4orf45Q96LM5 186 aa14.59□□□□□ -0.07
USP4-201ENST00000265560 SLC30A2Q9BRI3 323 aa14.59□□□□□ -0.07
USP4-201ENST00000265560 MFRPQ9BY79 579 aa14.59□□□□□ -0.07
USP4-201ENST00000265560 WDR12Q9GZL7 423 aaKnown RBP14.59□□□□□ -0.07
USP4-201ENST00000265560 CALHM2Q9HA72 323 aa14.59□□□□□ -0.07
USP4-201ENST00000265560 CRNNQ9UBG3 495 aaPredicted RBP14.59□□□□□ -0.07
USP4-201ENST00000265560 CMAHPQ9Y471 501 aa14.59□□□□□ -0.07
USP4-201ENST00000265560 TMEM269A0A1B0GVZ9 245 aa14.59□□□□□ -0.07
USP4-201ENST00000265560 CENPBD1B2RD01 187 aa14.59□□□□□ -0.07
USP4-201ENST00000265560 LOC110117498-PIK3R3F6TDL0 507 aa14.59□□□□□ -0.07
USP4-201ENST00000265560 ZNF432O94892 652 aa14.59□□□□□ -0.07
USP4-201ENST00000265560 MAS1P04201 325 aa14.59□□□□□ -0.07
USP4-201ENST00000265560 PSMD7P51665 324 aa14.59□□□□□ -0.07
USP4-201ENST00000265560 BLVRAP53004 296 aa14.59□□□□□ -0.07
USP4-201ENST00000265560 HSD17B12Q53GQ0 312 aa14.59□□□□□ -0.07
USP4-201ENST00000265560 TMEM106AQ96A25 262 aa14.59□□□□□ -0.07
USP4-201ENST00000265560 DERL3Q96Q80 235 aa14.59□□□□□ -0.07
USP4-201ENST00000265560 SH3GL3Q99963 347 aa14.59□□□□□ -0.07
USP4-201ENST00000265560 MED18Q9BUE0 208 aa14.59□□□□□ -0.07
USP4-201ENST00000265560 ULBP2Q9BZM5 246 aa14.59□□□□□ -0.07
USP4-201ENST00000265560 UGT2A1Q9Y4X1 527 aa14.59□□□□□ -0.07
USP4-201ENST00000265560 K7EM74 188 aa14.58□□□□□ -0.08
USP4-201ENST00000265560 FZD7O75084 574 aa14.58□□□□□ -0.08
USP4-201ENST00000265560 VAMP5O95183 116 aa14.58□□□□□ -0.08
USP4-201ENST00000265560 HIST3H3Q16695 136 aa14.58□□□□□ -0.08
USP4-201ENST00000265560 GFOD2Q3B7J2 385 aa14.58□□□□□ -0.08
USP4-201ENST00000265560 LINGO2Q7L985 606 aa14.58□□□□□ -0.08
USP4-201ENST00000265560 AAED1Q7RTV5 226 aa14.58□□□□□ -0.08
USP4-201ENST00000265560 NAA40Q86UY6 237 aa14.58□□□□□ -0.08
USP4-201ENST00000265560 TSEN15Q8WW01 171 aaKnown RBP14.58□□□□□ -0.08
USP4-201ENST00000265560 DCBLD2Q96PD2 775 aa14.58□□□□□ -0.08
USP4-201ENST00000265560 COQ7Q99807 217 aa14.58□□□□□ -0.08
USP4-201ENST00000265560 PRRG4Q9BZD6 226 aa14.58□□□□□ -0.08
USP4-201ENST00000265560 KLHL9Q9P2J3 617 aa14.58□□□□□ -0.08
USP4-201ENST00000265560 A0A075B6Q4 140 aa14.58□□□□□ -0.08
USP4-201ENST00000265560 GLSO94925 669 aaPredicted RBP14.58□□□□□ -0.08
USP4-201ENST00000265560 SRMP19623 302 aa14.58□□□□□ -0.08
USP4-201ENST00000265560 MTNR1BP49286 362 aa14.58□□□□□ -0.08
USP4-201ENST00000265560 HES5Q5TA89 166 aa14.58□□□□□ -0.08
USP4-201ENST00000265560 SFXN4Q6P4A7 337 aa14.58□□□□□ -0.08
USP4-201ENST00000265560 CCDC190Q86UF4 302 aa14.58□□□□□ -0.08
USP4-201ENST00000265560 ZFP62Q8NB50 900 aaPredicted RBP14.58□□□□□ -0.08
USP4-201ENST00000265560 RNF128Q8TEB7 428 aa14.58□□□□□ -0.08
USP4-201ENST00000265560 SLC5A6Q9Y289 635 aa14.58□□□□□ -0.08
USP4-201ENST00000265560 TRAV8-7A0A075B6U6 113 aa14.57□□□□□ -0.08
USP4-201ENST00000265560 LOC102725191A0A1B0GVB3 256 aa14.57□□□□□ -0.08
USP4-201ENST00000265560 SNRPBP14678 240 aaKnown RBP14.57□□□□□ -0.08
USP4-201ENST00000265560 RAB3BP20337 219 aa14.57□□□□□ -0.08
USP4-201ENST00000265560 CD40LGP29965 261 aa14.57□□□□□ -0.08
USP4-201ENST00000265560 TUSC5Q8IXB3 177 aa14.57□□□□□ -0.08
USP4-201ENST00000265560 OR2AJ1Q8NGZ0 328 aa14.57□□□□□ -0.08
USP4-201ENST00000265560 SOX7Q9BT81 388 aa14.57□□□□□ -0.08
USP4-201ENST00000265560 FAM117AQ9C073 453 aa14.57□□□□□ -0.08
USP4-201ENST00000265560 A0A0G2JK05 382 aa14.57□□□□□ -0.08
USP4-201ENST00000265560 C5orf63A6NC05 138 aa14.57□□□□□ -0.08
USP4-201ENST00000265560 TMCC2O75069 709 aa14.57□□□□□ -0.08
USP4-201ENST00000265560 PPP5CP53041 499 aa14.57□□□□□ -0.08
USP4-201ENST00000265560 CEP78Q5JTW2 689 aa14.57□□□□□ -0.08
USP4-201ENST00000265560 DDI2Q5TDH0 399 aa14.57□□□□□ -0.08
USP4-201ENST00000265560 FAM131AQ6UXB0 335 aa14.57□□□□□ -0.08
USP4-201ENST00000265560 SLC22A16Q86VW1 577 aa14.57□□□□□ -0.08
USP4-201ENST00000265560 OR8H2Q8N162 312 aa14.57□□□□□ -0.08
USP4-201ENST00000265560 OR5H6Q8NGV6 325 aa14.57□□□□□ -0.08
USP4-201ENST00000265560 ASB17Q8WXJ9 295 aa14.57□□□□□ -0.08
USP4-201ENST00000265560 SPRR3Q9UBC9 169 aa14.57□□□□□ -0.08
USP4-201ENST00000265560 IQCMA0A1B0GVH7 501 aa14.57□□□□□ -0.08
USP4-201ENST00000265560 P2RY10O00398 339 aa14.57□□□□□ -0.08
USP4-201ENST00000265560 B4GALT1P15291 398 aa14.57□□□□□ -0.08
USP4-201ENST00000265560 ATF1P18846 271 aa14.57□□□□□ -0.08
USP4-201ENST00000265560 ROM1Q03395 351 aa14.57□□□□□ -0.08
USP4-201ENST00000265560 SDHCQ99643 169 aaPredicted RBP14.57□□□□□ -0.08
USP4-201ENST00000265560 GFI1Q99684 422 aa14.57□□□□□ -0.08
USP4-201ENST00000265560 COMMD4Q9H0A8 199 aa14.57□□□□□ -0.08
USP4-201ENST00000265560 C1orf198Q9H425 327 aa14.57□□□□□ -0.08
USP4-201ENST00000265560 A3GALT2U3KPV4 340 aa14.57□□□□□ -0.08
USP4-201ENST00000265560 TFECO14948 347 aaPredicted RBP14.56□□□□□ -0.08
USP4-201ENST00000265560 DHHO43323 396 aa14.56□□□□□ -0.08
USP4-201ENST00000265560 SERPINA3P01011 423 aa14.56□□□□□ -0.08
USP4-201ENST00000265560 UCHL1P09936 223 aa14.56□□□□□ -0.08
USP4-201ENST00000265560 EIF2S3P41091 472 aaKnown RBP14.56□□□□□ -0.08
USP4-201ENST00000265560 FOXG1P55316 489 aaPredicted RBP14.56□□□□□ -0.08
USP4-201ENST00000265560 PRSS12P56730 875 aa14.56□□□□□ -0.08
USP4-201ENST00000265560 P2RY14Q15391 338 aa14.56□□□□□ -0.08
USP4-201ENST00000265560 TAF13Q15543 124 aa14.56□□□□□ -0.08
USP4-201ENST00000265560 YIF1BQ5BJH7 314 aa14.56□□□□□ -0.08
USP4-201ENST00000265560 SAMD12Q8N8I0 201 aa14.56□□□□□ -0.08
USP4-201ENST00000265560 IL17RDQ8NFM7 739 aa14.56□□□□□ -0.08
USP4-201ENST00000265560 CAMK2AQ9UQM7 478 aa14.56□□□□□ -0.08
USP4-201ENST00000265560 ZNF891A8MT65 544 aaPredicted RBP14.56□□□□□ -0.08
USP4-201ENST00000265560 PHYHO14832 338 aa14.56□□□□□ -0.08
USP4-201ENST00000265560 ZNF708P17019 499 aa14.56□□□□□ -0.08
USP4-201ENST00000265560 GUCA1AP43080 201 aaPredicted RBP14.56□□□□□ -0.08
USP4-201ENST00000265560 TRAM1Q15629 374 aa14.56□□□□□ -0.08
USP4-201ENST00000265560 ZNF79Q15937 498 aa14.56□□□□□ -0.08
USP4-201ENST00000265560 Q499Y3 187 aa14.56□□□□□ -0.08
USP4-201ENST00000265560 STEAP3Q658P3 488 aa14.56□□□□□ -0.08
USP4-201ENST00000265560 CNIH2Q6PI25 160 aa14.56□□□□□ -0.08
USP4-201ENST00000265560 IGF2-ASQ6U949 168 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms