RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 KCNIP4Q6PIL6 250 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 SEMA6DQ8NFY4 1073 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 YIPF5Q969M3 257 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 EXOSC3Q9NQT5 275 aaKnown RBP9.8□□□□□ -0.84
CD44-201ENST00000263398 SLC39A9Q9NUM3 307 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 ASH2LQ9UBL3 628 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 KCND3Q9UK17 655 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 A4GNTQ9UNA3 340 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 SIT1Q9Y3P8 196 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 SNRPGP15A8MWD9 76 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 TSTD3H0UI37 97 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 H7C1Q1 480 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 CCSO14618 274 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 TBX19O60806 448 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 BCKDHBP21953 392 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 SERPINF1P36955 418 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 SNCAP37840 140 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 GABRA2P47869 451 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 WNT3P56703 355 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 GPR85P60893 370 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 PRSS36Q5K4E3 855 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 AVPI1Q5T686 147 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 LHX8Q68G74 356 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 RDH10Q8IZV5 341 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 HLA-CQ95604 372 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 NIPSNAP3BQ9BS92 247 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 CALHM2Q9HA72 323 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 SMCO4Q9NRQ5 59 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 KIR2DS1A0A191URI9 304 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 A0A1B0GUH1 482 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 PPM1DO15297 605 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 ST8SIA3O43173 380 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 FGF9P31371 208 aaPredicted RBP9.8□□□□□ -0.84
CD44-201ENST00000263398 PTGER4P35408 488 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 KIR2DS4P43632 304 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 CCR5P51681 352 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 TAGLNQ01995 201 aaKnown RBP9.8□□□□□ -0.84
CD44-201ENST00000263398 KIR2DS1Q14954 304 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 STAC2Q6ZMT1 411 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 OR51A2Q8NGJ7 313 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 OR6K3Q8NGY3 331 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 STT3BQ8TCJ2 826 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 ARSGQ96EG1 525 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 MRGPRX1Q96LB2 322 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 OR11A1Q9GZK7 315 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 ZNF576Q9H609 170 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 OR51B4Q9Y5P0 310 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 ARGFXA6NJG6 315 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 EPXP11678 715 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 ALOX5APP20292 161 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 PPP2CBP62714 309 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 PPP2CAP67775 309 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 PHLDA2Q53GA4 152 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 VWA2Q5GFL6 755 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 CST9LP1Q5W188 147 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 ASTLQ6HA08 431 aaPredicted RBP9.8□□□□□ -0.84
CD44-201ENST00000263398 BRICD5Q6PL45 260 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 ACOT7LQ6ZUV0 252 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 OR51A4Q8NGJ6 313 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 SMIM4Q8WVI0 70 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 SIGLEC11Q96RL6 698 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 WWTR1Q9GZV5 400 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 RBM38Q9H0Z9 239 aaKnown RBP9.8□□□□□ -0.84
CD44-201ENST00000263398 TXNIPQ9H3M7 391 aa9.8□□□□□ -0.84
CD44-201ENST00000263398 ISG20L2Q9H9L3 353 aaKnown RBP9.8□□□□□ -0.84
CD44-201ENST00000263398 MN1Q10571 1320 aaPredicted RBP9.79□□□□□ -0.84
CD44-201ENST00000263398 TRAV1-2A0A0B4J238 106 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 PRSS37A4D1T9 235 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 PLRG1O43660 514 aaKnown RBP9.79□□□□□ -0.84
CD44-201ENST00000263398 DFFBO76075 338 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 NXPH2O95156 264 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 CLDN1O95832 211 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 RPS27P42677 84 aaKnown RBP9.79□□□□□ -0.84
CD44-201ENST00000263398 CYB561P49447 251 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 AGERQ15109 404 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 H3F3CQ6NXT2 135 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 KIRREL2Q6UWL6 708 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 FJX1Q86VR8 437 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 ZNF683Q8IZ20 524 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 OR2G2Q8NGZ5 317 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 OR51E1Q8TCB6 317 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 GAREM1Q9H706 876 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 SPACA1Q9HBV2 294 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 TRAPPC4Q9Y296 219 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 SLC17A4Q9Y2C5 497 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 OR6C76A6NM76 312 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 C17orf112F2Z3M2 114 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 RAD52P43351 418 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 CAPZBP47756 277 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 RBP2P50120 134 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 PNLIPRP2P54317 469 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 SNTB1Q13884 538 aaKnown RBP9.79□□□□□ -0.84
CD44-201ENST00000263398 THEM4Q5T1C6 240 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 AGBL4Q5VU57 503 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 OR52W1Q6IF63 320 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 ZNF680Q8NEM1 530 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 LFNGQ8NES3 379 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 DMBX1Q8NFW5 382 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 BTF3L4Q96K17 158 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 PLA2G12AQ9BZM1 189 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms