RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 LCN6P62502 163 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 SIGLEC14Q08ET2 396 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 SYT6Q5T7P8 510 aaPredicted RBP11.67□□□□□ -0.54
USP40-201ENST00000251722 FBXO27Q8NI29 283 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 NOX3Q9HBY0 568 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 RPH3ALQ9UNE2 315 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 C17orf112F2Z3M2 114 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 AP4M1O00189 453 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 LINC01565O15544 149 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 TNFSF14O43557 240 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 F13BP05160 661 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 PIGAP37287 484 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 SEC61A1P61619 476 aaKnown RBP11.67□□□□□ -0.54
USP40-201ENST00000251722 PPP2CBP62714 309 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 PPP2CAP67775 309 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 SLC22A6Q4U2R8 563 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 OR5M10Q6IEU7 315 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 BCORP1Q8N888 145 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 TNFRSF13CQ96RJ3 184 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 GABRG3Q99928 467 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 FAM212BQ9NTI7 297 aaPredicted RBP11.67□□□□□ -0.54
USP40-201ENST00000251722 B3GALT5Q9Y2C3 310 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 CHRM2P08172 466 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 ZNF26P17031 533 aaPredicted RBP11.67□□□□□ -0.54
USP40-201ENST00000251722 SERPINA2P20848 420 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 HTR2CP28335 458 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 RAD52P43351 418 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 MFGE8Q08431 387 aaPredicted RBP11.67□□□□□ -0.54
USP40-201ENST00000251722 TEX30Q5JUR7 227 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 TMEM102Q8N9M5 508 aaPredicted RBP11.67□□□□□ -0.54
USP40-201ENST00000251722 DTWD2Q8NBA8 298 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 HAS2Q92819 552 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 CLEC1BQ9P126 229 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 HSD17B13Q7Z5P4 300 aaPredicted RBP11.67□□□□□ -0.54
USP40-201ENST00000251722 LRRC18Q8N456 261 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 C15orf54Q8N8G6 183 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 CXCL16Q9H2A7 254 aa11.67□□□□□ -0.54
USP40-201ENST00000251722 DOK2O60496 412 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 NXPH2O95156 264 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 ZGLP1P0C6A0 271 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 EDN3P14138 238 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 ALKBH1Q13686 389 aaKnown RBP11.66□□□□□ -0.54
USP40-201ENST00000251722 HEPHL1Q6MZM0 1159 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 PELI3Q8N2H9 469 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 KDM8Q8N371 416 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 OR4M1Q8NGD0 313 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 HPSE2Q8WWQ2 592 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 MIB2Q96AX9 1013 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 HRASLS5Q96KN8 279 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 FBXL2Q9UKC9 423 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 RAB22AQ9UL26 194 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 ADAMTS7Q9UKP4 1686 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 MYH14Q7Z406 1995 aaKnown RBP11.66□□□□□ -0.54
USP40-201ENST00000251722 SMLR1H3BR10 107 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 CNR1P21554 472 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 IKZF1Q13422 519 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 LFNGQ8NES3 379 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 OR10D4PQ8NGN7 298 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 FAM173AQ9BQD7 235 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 NXF5Q9H1B4 397 aaKnown RBP11.66□□□□□ -0.54
USP40-201ENST00000251722 MRPS28Q9Y2Q9 187 aaKnown RBP11.66□□□□□ -0.54
USP40-201ENST00000251722 TRBV4-1A0A0J9YWV2 114 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 KIR2DS1A0A191URI9 304 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 CYC1P08574 325 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 KIR2DS4P43632 304 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 HNRNPA3P51991 378 aaKnown RBP11.66□□□□□ -0.54
USP40-201ENST00000251722 TNK1Q13470 666 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 KIR2DS1Q14954 304 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 OR8B8Q15620 311 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 PLK5Q496M5 336 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 NHSL2Q5HYW2 709 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 SSX8Q7RTT4 187 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 NUDT22Q9BRQ3 303 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 GNG12Q9UBI6 72 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 EXO1Q9UQ84 846 aaKnown RBP11.66□□□□□ -0.54
USP40-201ENST00000251722 PUS1Q9Y606 427 aaKnown RBP eCLIP11.66□□□□□ -0.54
USP40-201ENST00000251722 ARRDC5A6NEK1 342 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 CRYAAP02489 173 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 CST2P09228 141 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 RFC3P40938 356 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 SPCS3P61009 180 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 LEXMQ3ZCV2 418 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 STPG2Q8N412 459 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 M0R296 226 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 QDPRP09417 244 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 TACR1P25103 407 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 PSMB10P40306 273 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 UCNP55089 124 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 TAS2R60P59551 318 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 DEFB109BQ30KR1 87 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 ADGRF3Q8IZF5 1079 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 SCMH1Q96GD3 660 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 ZNF582Q96NG8 517 aaPredicted RBP11.66□□□□□ -0.54
USP40-201ENST00000251722 NPAS1Q99742 590 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 NIPSNAP3BQ9BS92 247 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 SRRQ9GZT4 340 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 PLCXD1Q9NUJ7 323 aa11.66□□□□□ -0.54
USP40-201ENST00000251722 PTP4A3O75365 173 aa11.65□□□□□ -0.54
USP40-201ENST00000251722 KNG1P01042 644 aa11.65□□□□□ -0.54
USP40-201ENST00000251722 MT-ND4LP03901 98 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms