RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 CALCBP10092 127 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 GNB3P16520 340 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 ABCD3P28288 659 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 CDAP32320 146 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 OR10S1Q8NGN2 331 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 GPX8Q8TED1 209 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 UTP23Q9BRU9 249 aaKnown RBP9.56□□□□□ -0.88
USP28-201ENST00000003302 PRMT8Q9NR22 394 aaPredicted RBP9.56□□□□□ -0.88
USP28-201ENST00000003302 EPHA6Q9UF33 1036 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 PRSS37A4D1T9 235 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 F5H5P2 479 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 FOLR1P15328 257 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 NAGAP17050 411 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 NUP62P37198 522 aaPredicted RBP9.56□□□□□ -0.88
USP28-201ENST00000003302 EBPQ15125 230 aaKnown RBP9.56□□□□□ -0.88
USP28-201ENST00000003302 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.56□□□□□ -0.88
USP28-201ENST00000003302 KCTD20Q7Z5Y7 419 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 NAA40Q86UY6 237 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 METTL21AQ8WXB1 218 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 SLC41A2Q96JW4 573 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 G6PC3Q9BUM1 346 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 CNTD2Q9H8S5 307 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 TNFRSF10CO14798 259 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 EIF4E2O60573 245 aaKnown RBP9.56□□□□□ -0.88
USP28-201ENST00000003302 POU2F2P09086 479 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 ADCYAP1P18509 176 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 SLC25A1P53007 311 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 OR1D5P58170 312 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 PPP1R1AQ13522 171 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 ZNF273Q14593 569 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 HACD4Q5VWC8 232 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 DCXRQ7Z4W1 244 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 BVESQ8NE79 360 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 ZNF519Q8TB69 540 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 CASTOR1Q8WTX7 329 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 TMEM231Q9H6L2 316 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 POLE3Q9NRF9 147 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 FGF2P09038 288 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 RAB40ALP0C0E4 278 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 AKT2P31751 481 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 MECP2P51608 486 aaKnown RBP9.56□□□□□ -0.88
USP28-201ENST00000003302 EIF2B1Q14232 305 aaKnown RBP9.56□□□□□ -0.88
USP28-201ENST00000003302 FBXO46Q6PJ61 603 aaPredicted RBP9.56□□□□□ -0.88
USP28-201ENST00000003302 LMX1AQ8TE12 382 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 RAB40AQ8WXH6 277 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 C7orf50Q9BRJ6 194 aaKnown RBP9.56□□□□□ -0.88
USP28-201ENST00000003302 WBP1LQ9NX94 342 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 FAM25EA8MYX2 175 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 TIAF1O95411 115 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 NSA2O95478 260 aaKnown RBP9.55□□□□□ -0.88
USP28-201ENST00000003302 M6PRP20645 277 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 PRSS3P35030 304 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 CAPZBP47756 277 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 LBX1P52954 281 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 FBXW4P57775 412 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 RAB14P61106 215 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 RAP2BP61225 183 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 PNLDC1Q8NA58 520 aaKnown RBP9.55□□□□□ -0.88
USP28-201ENST00000003302 TTYH1Q9H313 450 aaPredicted RBP9.55□□□□□ -0.88
USP28-201ENST00000003302 G6PC2Q9NQR9 355 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 CENPMQ9NSP4 180 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 PRR14LQ5THK1 2151 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 A0A0A6YYD4 124 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 ITGB2P05107 769 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 NAT1P18440 290 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 ZNF227Q86WZ6 799 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 RRNAD1Q96FB5 475 aaKnown RBP9.55□□□□□ -0.88
USP28-201ENST00000003302 SLITRK2Q9H156 845 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 C12orf4Q9NQ89 552 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 PLEKHA6Q9Y2H5 1048 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 KCNK7Q9Y2U2 307 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 LOC107986453A0A1B0GWG9 222 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 MSGN1A6NI15 193 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 OR6C65A6NJZ3 312 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 OR6C76A6NM76 312 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 GPR31O00270 319 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 SLC17A2O00624 439 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 SRSF10O75494 262 aaKnown RBP9.55□□□□□ -0.88
USP28-201ENST00000003302 RAB3DO95716 219 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 IL33O95760 270 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 ECDO95905 644 aaPredicted RBP9.55□□□□□ -0.88
USP28-201ENST00000003302 NSDHLQ15738 373 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 TEX30Q5JUR7 227 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 LYPD6Q86Y78 171 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 OR5M9Q8NGP3 310 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 PPP1R1CQ8WVI7 109 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 MARVELD3Q96A59 401 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 SLC22A11Q9NSA0 550 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 OR14I1A6ND48 311 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 TMEM150CB9EJG8 249 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 MS4A18H0YCH9 400 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 SLC25A12O75746 678 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 HPP00738 406 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 HOXC4P09017 264 aaPredicted RBP9.55□□□□□ -0.88
USP28-201ENST00000003302 ABOP16442 354 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 BCKDHBP21953 392 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 DLX5P56178 289 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 MS4A18Q3C1V0 323 aa9.55□□□□□ -0.88
USP28-201ENST00000003302 JMJD6Q6NYC1 403 aaPredicted RBP9.55□□□□□ -0.88
USP28-201ENST00000003302 ZNF546Q86UE3 836 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms