RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 SLC10A3P09131 477 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 OR13C7P0DN81 318 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 USF1P22415 310 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-220ENST00000641603 GDI1P31150 447 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 BMI1P35226 326 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 LRRC73Q5JTD7 316 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 RELL2Q8NC24 303 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-220ENST00000641603 DAZLQ92904 295 aaKnown RBP4.29□□□□□ -1.72
SCN1A-220ENST00000641603 MACROD1Q9BQ69 325 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 TMEM204Q9BSN7 226 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 TRAV9-1A0A075B6T8 112 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 TBC1D3IA0A087WXS9 549 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 RBFOX3A6NFN3 312 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 HSBP1O75506 76 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 CCNOP22674 350 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 KHDC3LQ587J8 217 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 SH3RF2Q8TEC5 729 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 RAB40CQ96S21 281 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 CSF3RQ99062 836 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 SLX1AQ9BQ83 275 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 MRPS28Q9Y2Q9 187 aaKnown RBP4.29□□□□□ -1.72
SCN1A-220ENST00000641603 TRAPPC1Q9Y5R8 145 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 SOX1O00570 391 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-220ENST00000641603 ADAP1O75689 374 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 CRHP06850 196 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 HOXB5P09067 269 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 NDUFB7P17568 137 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 GCSHP23434 173 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 TLE1Q04724 770 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 GPNMBQ14956 572 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 HIST3H3Q16695 136 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 MPV17LQ2QL34 196 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 LINC00303Q3SY05 128 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 CLDN19Q8N6F1 224 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 DPH7Q9BTV6 452 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 SPANXCQ9NY87 97 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 SLC5A6Q9Y289 635 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 K7ERQ8 282 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 NSA2O95478 260 aaKnown RBP4.28□□□□□ -1.72
SCN1A-220ENST00000641603 ADH1BP00325 375 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 STUMQ69YW2 141 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF66Q6ZN08 573 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 ABI3BPQ7Z7G0 1075 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 CFAP52Q8N1V2 620 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 PGBD5Q8N414 524 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 CLEC2DQ9UHP7 191 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 KCNK6Q9Y257 313 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 FCF1Q9Y324 198 aaKnown RBP4.28□□□□□ -1.72
SCN1A-220ENST00000641603 BRINP1O60477 761 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 DOK2O60496 412 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 OR8U8P0C7N1 319 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 ARR3P36575 388 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 GRB2P62993 217 aaKnown RBP4.28□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF787Q6DD87 383 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 NPWQ8N729 165 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 OR13C5Q8NGS8 318 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 OR2T10Q8NGZ9 312 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 SIRT5Q9NXA8 310 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 VDAC3Q9Y277 283 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 MYH13Q9UKX3 1938 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 HEPACAM2A8MVW5 462 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 MMP9P14780 707 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 P2RY1P47900 373 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 ARF6P62330 175 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 MIDNQ504T8 468 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF362Q5T0B9 420 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-220ENST00000641603 PTOV1Q86YD1 416 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 ARL14EPQ8N8R7 260 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-220ENST00000641603 TMEM190Q8WZ59 177 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 COL25A1Q9BXS0 654 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-220ENST00000641603 GSN-AS1Q9NRJ2 163 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 LRP3O75074 770 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 NRASP01111 189 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 HRASP01112 189 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 KRASP01116 189 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 TMEM225BP0DP42 221 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 FASLGP48023 281 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 DHRS2Q13268 280 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 OR5I1Q13606 314 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 MLC1Q15049 377 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF805Q5CZA5 627 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 DYRK2Q92630 601 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 LHX4Q969G2 390 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 DDA1Q9BW61 102 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 SPANXDQ9BXN6 97 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 HES2Q9Y543 173 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 TGIF2-C20orf24A0A0A6YYL0 155 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 VSTM2BA6NLU5 285 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 SLC19A1P41440 591 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 OC90Q02509 493 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-220ENST00000641603 SSX1Q16384 188 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 IL20RBQ6UXL0 311 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 BTLAQ7Z6A9 289 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 NANOS1Q8WY41 292 aaKnown RBP4.28□□□□□ -1.72
SCN1A-220ENST00000641603 FOXN4Q96NZ1 517 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 P2RX4Q99571 388 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 PPP1R3EQ9H7J1 279 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF391Q9UJN7 358 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 LHX6Q9UPM6 363 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 IER3IP1Q9Y5U9 82 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms