RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 COQ2Q96H96 371 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 ARL5BQ96KC2 179 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 PRRC1Q96M27 445 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 FAM210AQ96ND0 272 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 OR2A5Q96R48 311 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 KCNS3Q9BQ31 491 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 ECSITQ9BQ95 431 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 BPIFA3Q9BQP9 254 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 MRPL45Q9BRJ2 306 aaKnown RBP1.68□□□□□ -2.14
CD44-239ENST00000639002 RGCCQ9H4X1 137 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 RNF167Q9H6Y7 350 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 TMEM185BQ9H7F4 350 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 SYNDIG1Q9H7V2 258 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 UBAP1Q9NZ09 502 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 IKZF2Q9UKS7 526 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 CARHSP1Q9Y2V2 147 aaKnown RBP1.68□□□□□ -2.14
CD44-239ENST00000639002 MEMO1Q9Y316 297 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 CUL9Q8IWT3 2517 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 A0A1B0GVL5 298 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 OR6C74A6NCV1 312 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 OR5B21A6NL26 309 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 SNTNA6NMZ2 147 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 H3BNH8 94 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 K7EM74 188 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 PSMD11O00231 422 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 XKRYO14609 159 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 POLR1CO15160 346 aaPredicted RBP1.67□□□□□ -2.14
CD44-239ENST00000639002 SLC31A2O15432 143 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 TIMM8AO60220 97 aaPredicted RBP1.67□□□□□ -2.14
CD44-239ENST00000639002 H6PDO95479 791 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 TSPAN12O95859 305 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 SERPIND1P05546 499 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 ADRA2AP08913 450 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 ZNF24P17028 368 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 OMGP23515 440 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 COL8A2P25067 703 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 U2AF2P26368 475 aaKnown RBP eCLIP1.67□□□□□ -2.14
CD44-239ENST00000639002 HMOX2P30519 316 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 FDFT1P37268 417 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 SPAM1P38567 509 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 GYG1P46976 350 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 SLC11A1P49279 550 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 CCT3P49368 545 aaKnown RBP1.67□□□□□ -2.14
CD44-239ENST00000639002 RAB9AP51151 201 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 OGDHQ02218 1023 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 SMARCB1Q12824 385 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 C1orf61Q13536 156 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 OR5I1Q13606 314 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 COTL1Q14019 142 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 PRPSAP1Q14558 356 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 USF2Q15853 346 aaPredicted RBP1.67□□□□□ -2.14
CD44-239ENST00000639002 DUSP7Q16829 419 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 HNRNPA1L2Q32P51 320 aaKnown RBP1.67□□□□□ -2.14
CD44-239ENST00000639002 NKAIN1Q4KMZ8 207 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 C6orf226Q5I0X4 101 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 COA6Q5JTJ3 125 aaKnown RBP1.67□□□□□ -2.14
CD44-239ENST00000639002 LIN9Q5TKA1 542 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 FBXW9Q5XUX1 488 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 TWF2Q6IBS0 349 aaKnown RBP1.67□□□□□ -2.14
CD44-239ENST00000639002 TRMT10CQ7L0Y3 403 aaKnown RBP1.67□□□□□ -2.14
CD44-239ENST00000639002 LINC00523Q86TU6 105 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 FAM9CQ8IZT9 166 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 OR2L13Q8N349 312 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 TRPV1Q8NER1 839 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 OR5T3Q8NGG3 340 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 ACTRT1Q8TDG2 376 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 GPX8Q8TED1 209 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 PYROXD1Q8WU10 500 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 PDCD6IPQ8WUM4 868 aaKnown RBP1.67□□□□□ -2.14
CD44-239ENST00000639002 PIBF1Q8WXW3 757 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 UFD1Q92890 307 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 SLC38A2Q96QD8 506 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 PANX2Q96RD6 677 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 C20orf24Q9BUV8 137 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 SLC7A5P2Q9GIP4 190 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 IL22Q9GZX6 179 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 AZI2Q9H6S1 392 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 RANBP3Q9H6Z4 567 aaPredicted RBP1.67□□□□□ -2.14
CD44-239ENST00000639002 TDRD3Q9H7E2 651 aaKnown RBP1.67□□□□□ -2.14
CD44-239ENST00000639002 C8orf33Q9H7E9 229 aaPredicted RBP1.67□□□□□ -2.14
CD44-239ENST00000639002 GEMIN7Q9H840 131 aaKnown RBP1.67□□□□□ -2.14
CD44-239ENST00000639002 MCCC2Q9HCC0 563 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 C20orf96Q9NUD7 363 aaPredicted RBP1.67□□□□□ -2.14
CD44-239ENST00000639002 EXD2Q9NVH0 621 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 IFNKQ9P0W0 207 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 PSMC3IPQ9P2W1 217 aaPredicted RBP1.67□□□□□ -2.14
CD44-239ENST00000639002 CD300AQ9UGN4 299 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 PITPNC1Q9UKF7 332 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 ADAM28Q9UKQ2 775 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 PACSIN2Q9UNF0 486 aaPredicted RBP1.67□□□□□ -2.14
CD44-239ENST00000639002 F11RQ9Y624 299 aaKnown RBP1.67□□□□□ -2.14
CD44-239ENST00000639002 NID2Q14112 1375 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 MYO16Q9Y6X6 1858 aa1.67□□□□□ -2.14
CD44-239ENST00000639002 LTBP4Q8N2S1 1624 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 MAST4O15021 2626 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 A0A0J9YYE9 177 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 A8MUU9 505 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 AKR7A2O43488 359 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 MGRN1O60291 552 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 CLDN9O95484 217 aa1.66□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms