RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 INTS1Q8N201 2190 aaKnown RBP5.62□□□□□ -1.51
SCN1A-217ENST00000637988 DOCK5Q9H7D0 1870 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 ZNF716A6NP11 495 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 K7EPK0 472 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 PRAF2O60831 178 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 OR2J2O76002 312 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 OR5G3P0C626 314 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 ZNF140P52738 457 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-217ENST00000637988 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 RBPMS2Q6ZRY4 209 aaKnown RBP5.62□□□□□ -1.51
SCN1A-217ENST00000637988 FAM71E2Q8N5Q1 922 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 NT5C3BQ969T7 300 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 LGALS12Q96DT0 336 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 FEVQ99581 238 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 PIMREGQ9BSJ6 248 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 ZNF436Q9C0F3 470 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-217ENST00000637988 OR52A1Q9UKL2 312 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 TRPM7Q96QT4 1865 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 AHCTF1Q8WYP5 2266 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 A0A096LPE4 126 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 A0A1W2PPZ6 126 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 PHF1O43189 567 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-217ENST00000637988 HPGDSO60760 199 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 NRASP01111 189 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 MEOX1P50221 254 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 RAB9AP51151 201 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 ADPRMQ3LIE5 342 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 RPL22L1Q6P5R6 122 aaKnown RBP5.62□□□□□ -1.51
SCN1A-217ENST00000637988 PIANPQ8IYJ0 282 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 OR2L13Q8N349 312 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 CHDHQ8NE62 594 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-217ENST00000637988 APH1BQ8WW43 257 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 FGF11Q92914 225 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 SORBS1Q9BX66 1292 aaKnown RBP5.62□□□□□ -1.51
SCN1A-217ENST00000637988 ZNF395Q9H8N7 513 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-217ENST00000637988 NMNAT1Q9HAN9 279 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-217ENST00000637988 SIX2Q9NPC8 291 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 IL17CQ9P0M4 197 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 LHX3Q9UBR4 397 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 RBMX2Q9Y388 322 aaKnown RBP5.62□□□□□ -1.51
SCN1A-217ENST00000637988 AKR7A3O95154 331 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 PSMB10P40306 273 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 KLF3P57682 345 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-217ENST00000637988 ZNF266Q14584 549 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 METRNLQ641Q3 311 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 ZNF788Q6ZQV5 615 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 LRRC15Q8TF66 581 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 TLCD1Q96CP7 247 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 MRGPRX4Q96LA9 322 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 OXGR1Q96P68 337 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 ALG12Q9BV10 488 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 SIRT5Q9NXA8 310 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 HDGFL3Q9Y3E1 203 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 NUBP2Q9Y5Y2 271 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 PLXNA1Q9UIW2 1896 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 MYOFQ9NZM1 2061 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 SEC16AO15027 2179 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 WNT7AO00755 349 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 SEMA7AO75326 666 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 CDK1P06493 297 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 OR2T7P0C7T2 308 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 FPR3P25089 353 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 CCR7P32248 378 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 SNRPGP62308 76 aaKnown RBP5.61□□□□□ -1.51
SCN1A-217ENST00000637988 PRTGQ2VWP7 1150 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 PLA1AQ53H76 456 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 METAP1DQ6UB28 335 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-217ENST00000637988 PTRH1Q86Y79 214 aaKnown RBP5.61□□□□□ -1.51
SCN1A-217ENST00000637988 Q8IYB0 196 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 ZFP41Q8N8Y5 198 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 ZNF420Q8TAQ5 688 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-217ENST00000637988 CHAC2Q8WUX2 184 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 SLC25A18Q9H1K4 315 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 WBP1LQ9NX94 342 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 AMDHD2Q9Y303 409 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 TSTD3H0UI37 97 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 SNNO75324 88 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-217ENST00000637988 FBXO45P0C2W1 286 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 ATXN1LP0C7T5 689 aaKnown RBP5.61□□□□□ -1.51
SCN1A-217ENST00000637988 APEX1P27695 318 aaKnown RBP5.61□□□□□ -1.51
SCN1A-217ENST00000637988 ABCD3P28288 659 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 CTSCP53634 463 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 DLX5P56178 289 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 CNIH3Q8TBE1 160 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 CCL17Q92583 94 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 TMEM56Q96MV1 263 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 FAM212BQ9NTI7 297 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-217ENST00000637988 ASF1BQ9NVP2 202 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 EXO1Q9UQ84 846 aaKnown RBP5.61□□□□□ -1.51
SCN1A-217ENST00000637988 IGKV6D-21A0A0A0MT36 114 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 HPNP05981 417 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 F5P12259 2224 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 HTR2CP28335 458 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 ZNF791Q3KP31 576 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-217ENST00000637988 BEST4Q8NFU0 473 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 OR51F2Q8NH61 342 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 TERB2Q8NHR7 220 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 OR52A5Q9H2C5 316 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 MED17Q9NVC6 651 aa5.61□□□□□ -1.51
SCN1A-217ENST00000637988 IGKV6-21A0A0C4DH24 114 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms